Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01186 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCTTGGTAGGAGTAGCACTTCAGACAATGGTTCTTTTATTTATCCTTCGGAAAATATGTCCATAGATAACATTTCTTTTCCATCTCATTGGAACACTGCACCAAGGTCAAACGGATATGCATCCACAAGTCTCAACATTGAAGCACCGCCTCATCAAACAGATGTATCAGGCACTTCTCATGATCATTTTTTGCCTTCACCAAGTGCTGGAATGTTTTATGCGATGCCTGAAAATTATGTACACCAGCCTTCTAATTCTAATTATGACAGACAAGCATTTTCTGCTGCTGATGGGGTTTTTAATGATCTTACAATGGGAAATGGACGAGGGCCTCAAAAGCGAAAGAGCCCTGGAATTCCTCCTGTCTGTGAAAGAGGCAGTACAAGCAGATATTTCAATGCTGCAAGTGCAGCTGATCGTCCTACATCTTCAGAATTGTGGCCAGAGAAGCCCAATATGGATTCTCTATATATGCCTTGGGATCATGTTAATATGACACCCACATTTAGAGGTAGAGGCCTTTCTATACGGGGCGAGGGTCCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGGCCCATTTATCAAATACTCATCCACACAACTCATACTCTACTGGTCTACCAGTTGACCATTCTTCTAGCGTGGTCGATCTGTCAACTCAAACTTCTGGCACTTTGACACGGGATTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCTCAAAGTTTTCGTAATAATCTGACTCAAACTGCAAGAGGAGTTCGCAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCATTTGGGACGTGTGATACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACTGTTGGCTGGCAGAGCAATGATAGACATGGAAGGTCAAGAATACCTAGTGATAGATATCGATCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATGATTACCATatcttcgtcaaaaccctaaccggtaaaacgattacgctagaggtcgagtcctctgacaccatcgataacgtgaaagctaagatccaggacaaggaaggcattccaccagaccagcagcgcttgatcttcgccggaaaacagctcgaagacggcagaaccctcgccgattacaatattcagaaagaatcgacgcttcatctggtgcttcgactccgcggagggatgcagatcttcgtgaagacgctcaccgggaaaactattactctggaggtggagagttctgatacgatcgataacgtgaaggcgaagattcaggataaggaagggattccaccggatcagcagcgtcttatcttcgctgggaagcagctcgaagacggacgcactctcgccgattacaatattcagaaggaatccacgcttcaccttgttctTAGGCTCCGTGGTGGCCTTCTCTAG 1992 0.3338 MGHRHLYSSSPMFEGEPDQNWNHMHMDQQYVNLGRSSTSDNGSFIYPSENMSIDNISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLPSPSAGMFYAMPENYVHQPSNSNYDRQAFSAADGVFNDLTMGNGRGPQKRKSPGIPPVCERGSTSRYFNAASAADRPTSSELWPEKPNMDSLYMPWDHVNMTPTFRGRGLSIRGEGPLRNVRSRSALDLESNLARAHLSNTHPHNSYSTGLPVDHSSSVVDLSTQTSGTLTRDWSPMSSCPPHGRVSSSDANAFNHEASHFLNGSGSSNAPVDVGGFHNEFGTSRNPTAPQSFRNNLTQTARGVRSNYSQRSTPTFRASSSLHLGRVIPSDDGLHMVAESYSSRHPRPLTTVGWQSNDRHGRSRIPSDRYRSLADEGFMIVDRTSLNGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEQSQEEETCAICLEEYKNMDDVGTLKACGHDYHIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGLL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01186 663 CDD Ubl_ubiquitin 586 661 - -
Gma13g01186 663 ProSitePatterns Ubiquitin domain signature. 536 561 IPR019954 -
Gma13g01186 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 513 IPR013083 -
Gma13g01186 663 Gene3D - 586 662 - -
Gma13g01186 663 Pfam Ubiquitin family 512 583 IPR000626 GO:0005515
Gma13g01186 663 Pfam Ubiquitin family 588 659 IPR000626 GO:0005515
Gma13g01186 663 SUPERFAMILY RING/U-box 475 512 - -
Gma13g01186 663 SMART ubq_7 510 581 IPR000626 GO:0005515
Gma13g01186 663 SMART ubq_7 586 657 IPR000626 GO:0005515
Gma13g01186 663 SUPERFAMILY Ubiquitin-like 585 661 IPR029071 -
Gma13g01186 663 MobiDBLite consensus disorder prediction 262 283 - -
Gma13g01186 663 MobiDBLite consensus disorder prediction 138 158 - -
Gma13g01186 663 PRINTS Ubiquitin signature 520 540 IPR019956 -
Gma13g01186 663 PRINTS Ubiquitin signature 562 583 IPR019956 -
Gma13g01186 663 PRINTS Ubiquitin signature 541 561 IPR019956 -
Gma13g01186 663 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 512 - -
Gma13g01186 663 CDD Ubl_ubiquitin 510 585 - -
Gma13g01186 663 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 512 IPR045191 GO:0061630
Gma13g01186 663 ProSiteProfiles Ubiquitin domain profile. 510 585 IPR000626 GO:0005515
Gma13g01186 663 Gene3D - 514 585 - -
Gma13g01186 663 ProSitePatterns Ubiquitin domain signature. 612 637 IPR019954 -
Gma13g01186 663 ProSiteProfiles Ubiquitin domain profile. 586 661 IPR000626 GO:0005515
Gma13g01186 663 SUPERFAMILY Ubiquitin-like 506 585 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01186 Gma-Chr13 26037106 26041932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01186 1 511 C3H Transcription Factor Family AT2G37150 41.321 4.40e-91 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01186 - - gmx:100786013 1045.42