Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01176 ATGGGGAGGAGAGGAAGTAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGAATTCAAGTAGATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGAATCAACCTCACAAACGGATAATGCACCACCTCTTCCTCCACCTGAGATTATTTTAACTCATGTTGAGAGTGAAATCAGCCATGAGCGTATTGAAGTTGCAACTGCAGTGGATGCTGTGGAACCTGTTCCTGCTGTTCAGATGGCAGCTGCTGAAGTTCAAGCCACCACAACTGTTCAGTTTAACAGTAAACCAACAGAAGAAGTGGCTGCAATCAGGATTCAAAAAGCTTTTCGGGGATACTTGGCAAGAAGAGAATTGCGCGCGTTAAGGGGGCTGGTCAGGTTGAGATCGCTGATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGTACTCTCCGTTCTATGCAGACTTTTGCTCATTTGCAAACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAATCAAGAACTACAAAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATTCGGCTTGGGGAGGAATGGGATGACAGCATACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTGCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCAAAACTGGAAGAATGCATCAAGATCTGTAAACCCAATGTTCATGGATCCAACCAATCCAGCCTGGGGTTGGAGTTGGTTGGAACGATGGATGGCAGCCCGGCCCTGGGAGAGCCATAGCCTGATGGAGAAAGAGAAGAACGACAATAAATCTCTAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAATCATTTGCTAAGTTTCAGCTCAATTCTGAGAAGCATTCTCCAACAGCCAGCCAAAATCCAGGCTCACCTAACTTTGAGTCCCATTCAAATCCTCCCAAGCCATCTTCTCCTGCAGTTGCTAGGAAACTGAAGAAAGCAAGTCCTAAGGACATCTTGGCTATAGACGATGGCACTAAGAGCATGGTTAGTGTGCAGTCAGAGCGGCCACGGAGGCACTCCATTGCTGGATCAATAGTGGGAGATGATGAAAGCCTTGCAAGCTCTCCATCTATTCCAAGTTACATGGTGCCAACTAAATCTGCAAAAGCTAAGTCCAGGATGCAAAGTCCATTTGCTGCAGAAAACGGAACCCCAGATAAAGGGTCCTCTGGGACTGCAAAGAAACGTCTTTCTTTCCCAGCTTCGCCTGCTAGGCCAAGGAGGCACTCAGGTCCACCAAAGGTAGAGAGCAGCTTCAATGCTGAAATCACTGTGGGAAATGGTGTGGCTGGTTGA 1413 0.4636 MGRRGSSWFSTVKKALSPEPKEKNDQNSSRSKKKWFGKQKLQTSESTSQTDNAPPLPPPEIILTHVESEISHERIEVATAVDAVEPVPAVQMAAAEVQATTTVQFNSKPTEEVAAIRIQKAFRGYLARRELRALRGLVRLRSLMEGPVVKRQAISTLRSMQTFAHLQTQIRSRRLRMLEENQELQKQLLQKHAKELESIRLGEEWDDSIQSKEQVEAKLLSKYEAAMRRERAMAYSFSHQQNWKNASRSVNPMFMDPTNPAWGWSWLERWMAARPWESHSLMEKEKNDNKSLRSSSRGITSAEISKSFAKFQLNSEKHSPTASQNPGSPNFESHSNPPKPSSPAVARKLKKASPKDILAIDDGTKSMVSVQSERPRRHSIAGSIVGDDESLASSPSIPSYMVPTKSAKAKSRMQSPFAAENGTPDKGSSGTAKKRLSFPASPARPRRHSGPPKVESSFNAEITVGNGVAG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01176 470 MobiDBLite consensus disorder prediction 16 32 - -
Gma13g01176 470 MobiDBLite consensus disorder prediction 408 430 - -
Gma13g01176 470 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Gma13g01176 470 MobiDBLite consensus disorder prediction 1 60 - -
Gma13g01176 470 Coils Coil 175 195 - -
Gma13g01176 470 SMART iq_5 110 132 IPR000048 GO:0005515
Gma13g01176 470 MobiDBLite consensus disorder prediction 313 340 - -
Gma13g01176 470 PANTHER IQ-DOMAIN 5-RELATED 5 466 - -
Gma13g01176 470 Gene3D iswi atpase 108 135 - -
Gma13g01176 470 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 466 - -
Gma13g01176 470 Pfam IQ calmodulin-binding motif 114 132 IPR000048 GO:0005515
Gma13g01176 470 Pfam Protein of unknown function (DUF4005) 386 447 IPR025064 -
Gma13g01176 470 MobiDBLite consensus disorder prediction 313 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01176 Gma-Chr13 25950346 25953573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01176 1 469 IQD Protein Family AT5G03040 51.943 1.02e-139 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01176 - - gmx:100799058 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00466 10 4541571 4545428 Gma13g01176 13 25950346 25953573 GST
Gma19g01691 19 46215767 46220300 Gma13g01176 13 25950346 25953573 PCT
Gma03g01643 03 42556360 42560577 Gma13g01176 13 25950346 25953573 PCT
Gma13g01176 13 25950346 25953573 Gma19g01691 19 46215767 46220300 PCT
Gma13g01176 13 25950346 25953573 Gma03g01643 03 42556360 42560577 PCT