Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01171 ATGGGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 429 0.4639 MGKTHGMGSARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01171 142 MobiDBLite consensus disorder prediction 1 30 - -
Gma13g01171 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Gma13g01171 142 TIGRFAM uS12_E_A: ribosomal protein uS12 7 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Gma13g01171 142 Gene3D - 25 142 IPR012340 -
Gma13g01171 142 PANTHER 40S RIBOSOMAL PROTEIN S23 1 142 - -
Gma13g01171 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma13g01171 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma13g01171 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Gma13g01171 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Gma13g01171 142 MobiDBLite consensus disorder prediction 9 25 - -
Gma13g01171 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01171 Gma-Chr13 25895266 25897032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01171 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.366 3.26e-95 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01171 K02973 - gmx:100500013 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00463 10 4490111 4491618 Gma13g01171 13 25895266 25897032 GST
Gma19g01689 19 46198888 46202587 Gma13g01171 13 25895266 25897032 PCT
Gma03g01641 03 42540599 42542397 Gma13g01171 13 25895266 25897032 PCT
Gma13g01171 13 25895266 25897032 Gma19g01689 19 46198888 46202587 PCT
Gma13g01171 13 25895266 25897032 Gma03g01641 03 42540599 42542397 PCT