Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01165 ATGGCCGCCGCAGCACGCCCTCTCGTCACCGTGCAGGCCCTCGACGGTGACATGGCAACCGATGCCTCCGCCACCGTTCCCATCCCTGACGTCATGAAGGCCTCTATCCGCCCCGACATCGTCAATTTCGTACACTCGAACATCTCCAAGAACAGCCGCCAGCCATACGCCGTCAGTCGTCGCGCTGGTCACCAGACCTCCGCCGAATCCTGGGGTACCGGCCGAGCCGTCTCCCGTATCCCCCGTGTTCCCGGCGGCGGAACCCACCGCGCCGGCCAAGGAGCCTTTGGAAACATGTGCCGCGGCGGACGCATGTTCGCCCCGACCAAGATCTGGCGCCGCTGGCATAGGAAGATCAACGTGAACCAGAAGCGCTACGCCGTCGTCTCCGCCATTGCTGCCTCCGCCATTCCTTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGTCTGTCCCGGAGCTCCCCCTTGTCGTCAGCGACTCCGCCGAAGGAGTCGAGAAGACAAAAGAAGCGATCAAAGTCCTCAAGCAGATCGGAGCATTCCCGGACGCCGAAAAGGCTAAAGACAGCCGCAGCATTCGTCCCGGCAAGGGAAAAATGCGTAACCGCCGCTACATCTCTCGCCGGGGACCACTTGTGGTGTACGGAACCGAAGGTGCGAAGGCCGTTAAGGCCTTCCGTAACGTCCCCGGCGTCGAGGTCGCCAACGTCGAGAGGCTGAACCTTCTGAAGCTGGCCCCCGGTGGGCACCTCGGGAGGTTTGTAATTTGGACCAAGAGCGCTTTCGAGAAGTTGGATTCAATTTACGGGTCTTTTGATAAGCCCTCTGAGAAGAAGAAGGGATACCTGCTTCCCAGGTCCAAGATGGTGAATTCGGACCTCTCCAGGATTATTAATTCTGATGAGGTGCAATCTGTTGTGAGGCCCATTAAGAAGGATGTGAAGAGGGCCACTCTCAAGAAGAACCCTCTTAAGAATCTCAACTCGATGCTGAAGCTGAATCCTTATGCCAAGACTGCTAAGAGGATGGCCCTTCTCGCTGAGGCACAGCGGGTTAAGGTCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTCTCTAAGGAGGAAGCGTCTGCCATCAAGGCTGCTGGGAAAGCATGGTATCACACTATGGTGTCAGATTCTGATTATACAGAATTCGACAACTTTTCTAAGTGGTTGGGTGTTTCACAGTAA 1218 0.5714 MAAAARPLVTVQALDGDMATDASATVPIPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFPDAEKAKDSRSIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLSRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNSMLKLNPYAKTAKRMALLAEAQRVKVKKEKLDKKRKTVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01165 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Gma13g01165 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
Gma13g01165 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 351 IPR025755 -
Gma13g01165 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gma13g01165 405 Coils Coil 342 362 - -
Gma13g01165 405 MobiDBLite consensus disorder prediction 54 95 - -
Gma13g01165 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Gma13g01165 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
Gma13g01165 405 MobiDBLite consensus disorder prediction 54 73 - -
Gma13g01165 405 SUPERFAMILY Ribosomal protein L4 15 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01165 Gma-Chr13 25825626 25828139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01165 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.911 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01165 K02930 - gmx:100779764 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00456 10 4415389 4418362 Gma13g01165 13 25825626 25828139 GST
Gma19g01683 19 46124864 46126573 Gma13g01165 13 25825626 25828139 PCT
Gma03g01636 03 42475992 42477440 Gma13g01165 13 25825626 25828139 PCT
Gma13g01165 13 25825626 25828139 Gma19g01683 19 46124864 46126573 PCT
Gma13g01165 13 25825626 25828139 Gma03g01636 03 42475992 42477440 PCT