Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01162 ATGAACTCCTCCACCAACACCTCGAATTCTCAGTCAATGGCTGCAGCAGCCAGTGATGGGTCTGGGAAGAAGGTAAGAAAACCTTACACCATAACCAAGTCCAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAATTatttgacagggactggaagaaaattgaagattttgtaggttcaaaaacagttattcagattcgaagccatgctcagaagtacttcttgaaagttcaaaagaatgggacagtggcacatgtgcctcctccccgtccaaagcgcaaagctgctcatccttacccacaaaaggcatcaaaaaatgttttggtgccactaccagcttctgttggttatgcttcatcaagaaatacgcttgcacctgggtttgcctcatgggatgaaacttccctgctgatgaatgccggagctgataaacccatgacctgtcaggatgaactcaacaatgttcatcatggaaatgaagctgatattggatcaaaggggataacacagattaccaacagcagtctcagtggtgttggaaattctactagaacactactgacttctgagataccaaagcaagggaaacaagctccagtgcttcatgGTTTGCCAGATTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTATTTGATCCAGAAACAAATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATTAAGAAGGTATTGTCAACATATGATGTCAATCCCATGGCAGTAGGAATTGATGTCAAGAAGCAGACAAATGATCTATCATGTCAAACCGCTTAA 888 0.1982 MNSSTNTSNSQSMAAAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASVGYASSRNTLAPGFASWDETSLLMNAGADKPMTCQDELNNVHHGNEADIGSKGITQITNSSLSGVGNSTRTLLTSEIPKQGKQAPVLHGLPDFAEVYGFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKVLSTYDVNPMAVGIDVKKQTNDLSCQTA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01162 295 Gene3D - 38 85 - -
Gma13g01162 295 SMART sant 34 82 IPR001005 -
Gma13g01162 295 Pfam Myb-like DNA-binding domain 35 80 IPR001005 -
Gma13g01162 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 84 IPR017930 -
Gma13g01162 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 82 IPR006447 GO:0003677
Gma13g01162 295 CDD SANT 37 80 IPR001005 -
Gma13g01162 295 ProSiteProfiles SANT domain profile. 33 86 IPR017884 -
Gma13g01162 295 MobiDBLite consensus disorder prediction 1 37 - -
Gma13g01162 295 PANTHER SWI/SNF COMPLEX-RELATED 3 287 - -
Gma13g01162 295 PANTHER PROTEIN REVEILLE 8 3 287 - -
Gma13g01162 295 MobiDBLite consensus disorder prediction 1 17 - -
Gma13g01162 295 ProSiteProfiles Myb-like domain profile. 30 80 IPR001005 -
Gma13g01162 295 SUPERFAMILY Homeodomain-like 29 85 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01162 Gma-Chr13 25812162 25819078 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma13g01162 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01162 - - gmx:100797466 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00455 10 4404718 4409379 Gma13g01162 13 25812162 25819078 GST
Gma19g01682 19 46119271 46122790 Gma13g01162 13 25812162 25819078 PCT
Gma03g01635 03 42471119 42474233 Gma13g01162 13 25812162 25819078 PCT
Gma13g01162 13 25812162 25819078 Gma19g01682 19 46119271 46122790 PCT
Gma13g01162 13 25812162 25819078 Gma03g01635 03 42471119 42474233 PCT