Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01158 ATGACAAGGGTTGTCCAGATGAGTGTTGATGGCGACGGCAAAGAGCTGAGAGAACTGAATCAGTGCTTACGAGATGGGAAGAAAATTGCTGGTGGGGAACGTGGTTTATACGAGGGCGATGAAGTGAAATGTAATGGAGTTGCTGAAGAAGTTAAGATTGGAAAGGGGGGGATTGTGGAGTCCTCCTCTGTCCAGCAGCATATACCACAGCCTCAAGGGGCAATAATTTGTTGGGAGAGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGACGCAGCAAATGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTCATTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGGTCTACTATACAAGATTATGGGCCACAAAACCCGGAAAAATATTCCAGTAGTTATGATGTCATCTCATGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTGTAAAATCAAAGAGTCTTGAGAAGTTTGATAATAATTCTGGAAGCAATGGCGAAGATGATAATGGAAGTATAGGACTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCATGGACCAAACATGCTGTAGAAGTTGATAGTCCTAAACCAGTTTCCCACTGGGATAAAATAGCTGAGTGCCCTGACAGTACCTGTGCTCAAGTTGTTCACTCCAATGCTGAAATTGGTGAGAACAAGGTGGTTCCTCTAGCTGCGAAGGAGTGTCCAGAACAGAAGGAACAACTTGTCAAAACTGCAGGTTCTAAACATAGCAATGCACCTGATGTCGGCCCCTCTAAATTTAATGATCAAATTAATAGAGGACAACTGGATCTTAATTGTGAAAATCAATCTAGCAAGCTAAGGTGCAAAGGTTTATCACTGTCTGATGCCATTACTAGCACTTCTGATTCTCAGATGCATAGTGGAGGATTTGAAGCCCTGTATAAAAAACCCAAGTCCTCAGATATTGAAAATAAAGACACTAATAATGATGAAGAATTGCCATCTCTTGAGCTCAGTTTAAAGAGGCTTAGAGGAGTTGAAGATGCTGGTATTGCAATTCAGGATGACAGGAATGTTTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTTAAACCCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCTCATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCACGATATTCAATCTCATTCTAGCGGCAATCCTCCTAACCAAAACTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTACGCTAAATCTGCAGTTATAAGTGAGCCAGCAGTAGCATCGACAACCAAATGTTTGTACCAAACATCTGCTTACCAGCCTGAAAAAAACAACCTTGTTTGTACCTCTCAACAAGTTGTCTTACATAATACTGAAGATACGACGGCAACAATGCTGGCACCACCTAAACTAGACAGACATAAAGATTCTGCAGCTCCAGACTTCCATCTCCATTGTGAAAACCATAACTGTATTGCTGACAACATGAAGCACCAGCTGCCACCTGATCATGATGCTGAATCTATAAAGAAAATGGCCACTGCTGCTCCACATTGTGGATCATCAAATGCGGTTGAAGTGCTAGTTGAAGGTAATGTTGGAAACCACAGTATCAATAGAAGTGCCTCAGGCAGCAACAATGGAAGCAATGGACAAAATGGGAGCAGCACGGCGGTTAATGCTGGAGGGACAAACATGAAAAGCAACAATGGACTCACTGGGAATAGTGGCAGTGGTGATGCTAGCGGAAGTGTAAGTGCCAACAGAGTAGATCAAAACAAGACTTCTCAAAGGGAAGCGGCCTTAACTAAATTTCGCCAAAAGAGAAAAGAGAGAAGGGAGAGGTGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAGATTAGCTGAACAACGACCTCGATTTCGTGGACAATTTGTTCGACAGTCCTCTAACGAAAATGCAAGTGAGGCAACAACAGATAGCTGA 2268 0.4211 MTRVVQMSVDGDGKELRELNQCLRDGKKIAGGERGLYEGDEVKCNGVAEEVKIGKGGIVESSSVQQHIPQPQGAIICWERFLHIRSLKVLLVEYDDSTRHVVTALLRNCSYEVIDAANGLQAWKILEDLTNHIDLILTEVAMPGLSGIGLLYKIMGHKTRKNIPVVMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNGEDDNGSIGLNNGDGSDNGSGTQSSWTKHAVEVDSPKPVSHWDKIAECPDSTCAQVVHSNAEIGENKVVPLAAKECPEQKEQLVKTAGSKHSNAPDVGPSKFNDQINRGQLDLNCENQSSKLRCKGLSLSDAITSTSDSQMHSGGFEALYKKPKSSDIENKDTNNDEELPSLELSLKRLRGVEDAGIAIQDDRNVLRRSDQSAFSRYNAALNPKKSPTGCVGSNSPHNNSLEVTKKDSSHDIQSHSSGNPPNQNSNGASNNIDMGSTTNNAYAKSAVISEPAVASTTKCLYQTSAYQPEKNNLVCTSQQVVLHNTEDTTATMLAPPKLDRHKDSAAPDFHLHCENHNCIADNMKHQLPPDHDAESIKKMATAAPHCGSSNAVEVLVEGNVGNHSINRSASGSNNGSNGQNGSSTAVNAGGTNMKSNNGLTGNSGSGDASGSVSANRVDQNKTSQREAALTKFRQKRKERRERCFHKKVRYQSRKRLAEQRPRFRGQFVRQSSNENASEATTDS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01158 755 Pfam CCT motif 697 742 IPR010402 GO:0005515
Gma13g01158 755 MobiDBLite consensus disorder prediction 485 508 - -
Gma13g01158 755 MobiDBLite consensus disorder prediction 211 270 - -
Gma13g01158 755 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 731 IPR045279 GO:0009736
Gma13g01158 755 Pfam Response regulator receiver domain 89 200 IPR001789 GO:0000160
Gma13g01158 755 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 32 731 - -
Gma13g01158 755 CDD psREC_PRR 89 192 - -
Gma13g01158 755 Gene3D - 86 241 - -
Gma13g01158 755 MobiDBLite consensus disorder prediction 707 725 - -
Gma13g01158 755 MobiDBLite consensus disorder prediction 635 699 - -
Gma13g01158 755 ProSiteProfiles Response regulatory domain profile. 88 206 IPR001789 GO:0000160
Gma13g01158 755 MobiDBLite consensus disorder prediction 737 755 - -
Gma13g01158 755 MobiDBLite consensus disorder prediction 451 474 - -
Gma13g01158 755 MobiDBLite consensus disorder prediction 451 508 - -
Gma13g01158 755 ProSiteProfiles CCT domain profile. 700 742 IPR010402 GO:0005515
Gma13g01158 755 MobiDBLite consensus disorder prediction 635 755 - -
Gma13g01158 755 SMART REC_2 87 202 IPR001789 GO:0000160
Gma13g01158 755 SUPERFAMILY CheY-like 85 211 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01158 Gma-Chr13 25758523 25769714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01158 163 744 Response Regulator Gene Family AT5G02810 46.635 2.10e-115 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gma13g01158 Response_reg 4.4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01158 K12129 - gmx:100796933 1419.45