Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01157 ATGGGTTGGATTCCCTGTTCCGGAAGTTCAAACACTAAGAAGAAGTTAAAGAAGAAATTGGAGAAGATGGAAGGGCAGAGCAGCCTCGTTGATCCGATCAAAGCCACCCCAGGGAAATTAAAGAGGAATCCATCCATGAATTCCAAAAATTCCTCCAAAAATGGGAACCCTGAGCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAACTTCAGAGCCGAATGTCTTTTGGGTGAGGGAGGCTTTGGCAGAGTATACAAGGGGCGTTTGGAAAATATTAATCAGATTGTTGCAATTAAACAACTTGACCGAAATGGGCTACAAGGGAATAGAGAATTCCTTGTTGAAGTGCTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGGGATCAAAGACTTCTAGTTTATGAATTTATGTCATTAGGATCCTTGGAAGACCACTTACATGatatttctcctggcaagaaacgacttgactggaacacgcggatgaaaatagctgctggggctgcaagaggattggaatatttgcatgacaaagctaatcctcctgtcatataccgagatttaaagtgctccaacattttgctcggtgaaggatatcatccaaagttatctgattttggtttggctaaacttggtccagtgggggaaaacacccatgtatcaacaagggttatgggcacctatggatattgtgctccagagtatgcaatgacaggtcaactgactctgaaatcagatgtttatagctttggtgttgttcttctggaaataattactggaaggaaagcaattgacaattcaaaagctgcaggagagcagaatcttgttgcatggGCCAGACCCTTGTTCAAAGATCGAAGAAAATTTTCGCAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCAAGAGGGCTATTCCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGAGTTACCTTGCTTCACAAAAATATGACCCGAATACTCAGACATTACAAAGCTCTCGCCTTGCTCCTGGTACTCCTCCAAGATCCAAGAGGGGATATTGA 1152 0.2899 MGWIPCSGSSNTKKKLKKKLEKMEGQSSLVDPIKATPGKLKRNPSMNSKNSSKNGNPEHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMSLGSLEDHLHDISPGKKRLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLFQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTQTLQSSRLAPGTPPRSKRGY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01157 383 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01157 383 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01157 383 MobiDBLite consensus disorder prediction 41 58 - -
Gma13g01157 383 Gene3D Transferase(Phosphotransferase) domain 1 154 372 - -
Gma13g01157 383 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 381 - -
Gma13g01157 383 MobiDBLite consensus disorder prediction 1 58 - -
Gma13g01157 383 PANTHER OS07G0668900 PROTEIN 1 381 - -
Gma13g01157 383 SUPERFAMILY Protein kinase-like (PK-like) 56 351 IPR011009 -
Gma13g01157 383 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Gma13g01157 383 Pfam Protein tyrosine and serine/threonine kinase 81 348 IPR001245 GO:0004672|GO:0006468
Gma13g01157 383 Coils Coil 6 26 - -
Gma13g01157 383 CDD STKc_IRAK 83 351 - -
Gma13g01157 383 Gene3D Phosphorylase Kinase; domain 1 61 153 - -
Gma13g01157 383 MobiDBLite consensus disorder prediction 364 383 - -
Gma13g01157 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01157 Gma-Chr13 25738506 25742398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01157 43 356 Glycoside Hydrolase AT3G07070 69.497 1.22e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gma13g01157 PK_Tyr_Ser-Thr 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01157 - - gmx:100776041 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00451 10 4343853 4347483 Gma13g01157 13 25738506 25742398 GST
Gma19g01675 19 46064901 46068047 Gma13g01157 13 25738506 25742398 PCT
Gma03g01628 03 42429123 42432319 Gma13g01157 13 25738506 25742398 PCT
Gma13g01157 13 25738506 25742398 Gma19g01675 19 46064901 46068047 PCT
Gma13g01157 13 25738506 25742398 Gma03g01628 03 42429123 42432319 PCT