Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01152 ATGATGGTTAGATCGTGTTGGAAGCCTATTGCTGATGGTGATGAAGGAGATGGGAGTGGGAGAGTTGATGGACTTCTATGGTACAAGGATTTGGGGAACCATCTTTATGGGGAATTCTCAATGGCTGTGGTTCAGGCCAATAGTTCATTAGAGGATCGAGGTGAACTAGAGTCTGGACCATTGGGTTCTAATCACTTGGGTCCTCAAGGGACCTTTATAGGTGTTTATGATGGCCATGGTGGAAGTGAGGCCTCACAGTTTGTTAGTGACAATCTCTTCTGCAATCTCAAAAGGCTCGCAGCTGAACATCAAGGTGTGTCAGAACATGTTATCAAAAGGGCTTACTCAGCAACAGAGGAGAGTTTTCTGTCTCTTGTGAAGAAACAGTGGCTGAGTAAGCCACAGATTGCATCCACTGGCACTTGTTGTTTGGTGGGGGTAATTTGCAATGGCATGATATATGTTGCAAATTCTGGAGACTCCCGGGTGGTGCTAGGAAGATTAGAGAGAGCAACAAGGGAAACAGAAGCTATACAATTATCTACAGAACACAATGTTAACCAAGAATCAGTGAGAGATGAACTTCGGTCAAAGCACCCCTTTGATTCACAAATCGTGGTTTTGAGACAAAACGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCACGATCCATAGGGGATGCATATCTGAAGAAAGCAGAATTCAACAGGGATCCTCTACCAGCCAAGTATAGACTAGCAGAAACATTCTTCAGGCCAATTCTTAGTTGTGAGCCATCAACATCATCCCACACACTCCACCCTGATGATCAATTTCTCATATTTGCTTCTGATGGCTTATGGGAGCATCTTACCAACCAAGAGGCTGTTAACATAGTCAGCAACAACCCACCTAACGGAATTGCTAGAAGACTTGTGAAAGCTGCACTTAGAGAAGCAGCTAAGAAGTGTGAAATGAGACTTTCTGACCTCCAAAAGATTGAGCAAGGGATGAGGAGACACATCCATGATGACATAACAGTGATTGTGGTGTTTCTCAATCCCAAACTCACTGAGAATACTTCTCTCTGTGGTTCTCCTCTTTCAATCAAGGGAGGTGGGTCTACCAATTCCTAG 1116 0.4427 MMVRSCWKPIADGDEGDGSGRVDGLLWYKDLGNHLYGEFSMAVVQANSSLEDRGELESGPLGSNHLGPQGTFIGVYDGHGGSEASQFVSDNLFCNLKRLAAEHQGVSEHVIKRAYSATEESFLSLVKKQWLSKPQIASTGTCCLVGVICNGMIYVANSGDSRVVLGRLERATRETEAIQLSTEHNVNQESVRDELRSKHPFDSQIVVLRQNVWRVKGLIQVSRSIGDAYLKKAEFNRDPLPAKYRLAETFFRPILSCEPSTSSHTLHPDDQFLIFASDGLWEHLTNQEAVNIVSNNPPNGIARRLVKAALREAAKKCEMRLSDLQKIEQGMRRHIHDDITVIVVFLNPKLTENTSLCGSPLSIKGGGSTNS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01152 371 Gene3D - 29 355 IPR036457 -
Gma13g01152 371 Pfam Protein phosphatase 2C 58 315 IPR001932 -
Gma13g01152 371 SMART PP2C_4 32 344 IPR001932 -
Gma13g01152 371 CDD PP2Cc 36 346 IPR001932 -
Gma13g01152 371 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 369 - -
Gma13g01152 371 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
Gma13g01152 371 SUPERFAMILY PP2C-like 64 347 IPR036457 -
Gma13g01152 371 Coils Coil 307 327 - -
Gma13g01152 371 ProSiteProfiles PPM-type phosphatase domain profile. 46 346 IPR001932 -
Gma13g01152 371 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01152 Gma-Chr13 25689611 25691391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01152 2 367 PP2C-type Phosphatase Gene Family AT3G12620 63.957 8.36e-178 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01152 K01102 - gmx:100819870 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00446 10 4293689 4296657 Gma13g01152 13 25689611 25691391 GST
Gma19g01668 19 46040936 46043957 Gma13g01152 13 25689611 25691391 PCT
Gma03g01623 03 42407919 42410017 Gma13g01152 13 25689611 25691391 PCT
Gma13g01152 13 25689611 25691391 Gma19g01668 19 46040936 46043957 PCT
Gma13g01152 13 25689611 25691391 Gma03g01623 03 42407919 42410017 PCT