Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01140 ATGGGTAACTCCCATGGACACCGGCATCGCAAACACGGTAACTCCGTTCCTCCCAACACGGTTCCTCCTCCCCATAAATACAATCCTCACCCAACCACCTCCAATTCCACCATGCTTTCTCTTCCTTACACCCACGTCGACACCACCCTCCGCTCCCTCGCCGCCCAAGCCGAGGGCTTCGGTCGCTTCGCTATCGGCGGCCTCCACGGTCCCCTTCACCCCGTCACATCTCTCGCAGATGATGGACCGGGGTCACTGCGTGACGCGTGTCGCAGAAAAGAACCTTTGTGGATTGTGTTCGAAGTTTCCGGCACCATTCAACTCTCCTCGTACTTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATCAAACTCAGCGGAAAAGGCTTGCGGCTGAAGGAATGCGAGCACGTGATAATTTGCAATCTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGATGCCATTCAGATCAAACCTAATTCCAAGCACATATGGATCGATCGTTGCACGCTCAGTGATTTTGATGATGGGCTCATAGATATCACCCGAGAAAGCACAGACATTACTATTTCAAGGTGCCACTTCTCTCAGCATGACAAAGCCATGCTCATTGGGGCTGATCCCACGCATGTTGGAGATAGGTGCATGAGGGTGACCATACACCATTGTTTTTTCAATGGGACTCGACAGAGGCAACCTCGTGTTAGGTTTGCAAAAGTGCATCTGTACAATAACTATATCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGACAGAAGAAAGTGGCATTTAAGTACCTTACTGAGAAGGCAGCAGACAAGGAAGTGGGAGCAACTGGTACCATAAGGTCTGAAGGAGACATATTCTTAAATGGTGCTCAAAAAGGGTTAATGACTGAGGATGTTGGGTGCAACATGTTTCACCCCAGTGAACACTATCCCTCTTGGACAGTGGAAGCCCCTACAGACGATCTGAAACAGATTCTTCATCACTGCACTGGATGGCAATCTCTTGCTAAGCCAGCAGATCAAACACTATGA 1101 0.495 MGNSHGHRHRKHGNSVPPNTVPPPHKYNPHPTTSNSTMLSLPYTHVDTTLRSLAAQAEGFGRFAIGGLHGPLHPVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIQLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKAMLIGADPTHVGDRCMRVTIHHCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGATGTIRSEGDIFLNGAQKGLMTEDVGCNMFHPSEHYPSWTVEAPTDDLKQILHHCTGWQSLAKPADQTL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01140 366 PANTHER PECTATE LYASE 35 360 - -
Gma13g01140 366 SMART amb_all 83 281 IPR002022 -
Gma13g01140 366 Gene3D - 43 350 IPR012334 -
Gma13g01140 366 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Gma13g01140 366 PRINTS Pollen allergen Amb family signature 236 255 IPR018082 -
Gma13g01140 366 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Gma13g01140 366 PANTHER PECTATE LYASE 18-RELATED 35 360 IPR045032 GO:0030570
Gma13g01140 366 Pfam Pectate lyase 111 274 IPR002022 -
Gma13g01140 366 MobiDBLite consensus disorder prediction 1 39 - -
Gma13g01140 366 SUPERFAMILY Pectin lyase-like 56 358 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01140 Gma-Chr13 25559645 25562587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01140 78 363 Polysaccharide Lyase AT3G55140 76.224 8.00e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01140 K01728 - gmx:100814368 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00432 10 4152969 4155986 Gma13g01140 13 25559645 25562587 GST