Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01131 ATGGTAGCCATTCTGAAGAGACAAAGAGAAACCGAAGCCGAGGAGAGCATCATAAGACTGGCAGAAAGTCTCATGCAACTGTCGCGAGTCCAACAAAAAAGCAAGCCTCTTCTCAAAACCTTTTCTCCAACGGAGTTCGAGTGCAAAACCTGTAACCGCAAGTTTCCATCTTTTCAAGCCCTTGGTGGTCACAGGGCGAGCCACAAGAAGCCCAAGTTCGAAGGTGAAGAACTCAAAGAGGAGGCCAAGAAGGGTCTGAGTTTGGGGAACAAACCCAAAATGCACGAGTGTTCCATTTGCGGCATGGAATTCTCTCTGGGTCAGGCACTGGGGGGTCACATGAGAAAACACAGGGGTGCCACCAGTGAGAATAATAACGAAGCGTTTTCTTCTTCTATAAAGCAAGCAATTTCAAAAGTTCCAGTTTTGAAACGATCGAATAGCAAGAGGGTCATGTGCTTGGAGATGGACCTGAATTTAACGCCTTTGGAAAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCTAGAGTCGATCTTTCTTTGTAG 549 0.4627 MVAILKRQRETEAEESIIRLAESLMQLSRVQQKSKPLLKTFSPTEFECKTCNRKFPSFQALGGHRASHKKPKFEGEELKEEAKKGLSLGNKPKMHECSICGMEFSLGQALGGHMRKHRGATSENNNEAFSSSIKQAISKVPVLKRSNSKRVMCLEMDLNLTPLENDLKLLFGNKAPRVDLSL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01131 182 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gma13g01131 182 Gene3D Classic Zinc Finger 43 117 - -
Gma13g01131 182 SUPERFAMILY beta-beta-alpha zinc fingers 46 117 IPR036236 -
Gma13g01131 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Gma13g01131 182 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 5 177 - -
Gma13g01131 182 PANTHER ZINC FINGER PROTEIN ZAT5 5 177 - -
Gma13g01131 182 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Gma13g01131 182 SMART c2h2final6 95 117 IPR013087 -
Gma13g01131 182 SMART c2h2final6 46 68 IPR013087 -
Gma13g01131 182 Pfam C2H2-type zinc finger 46 71 - -
Gma13g01131 182 Pfam C2H2-type zinc finger 95 119 - -
Gma13g01131 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01131 Gma-Chr13 25450472 25451053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01131 5 180 C2H2 Transcription Factor Family AT3G53600 47.594 2.91e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g01131 zf-C2H2_6 5.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01131 - - gmx:100526874 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00424 10 4073948 4074786 Gma13g01131 13 25450472 25451053 GST
Gma19g01645 19 45854282 45854971 Gma13g01131 13 25450472 25451053 PCT
Gma03g01598 03 42222034 42222860 Gma13g01131 13 25450472 25451053 PCT
Gma13g01131 13 25450472 25451053 Gma19g01645 19 45854282 45854971 PCT
Gma13g01131 13 25450472 25451053 Gma03g01598 03 42222034 42222860 PCT