Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01130 ATGAAGAGACAGAGAGAGAACGAAGTAACAACGTTGGAAAGCTGGGACATGCAAATTTGTTCAACTTCAATCACACCCGACACAAGTGTTTCCAGTTCCACCATATCTCCGGAAGATGTATTTGAGTGCAAAACGTGCAACCGCAAGTTCAACTCTTTTCAAGCGCTGGGTGGCCATAGGGCTTGTCACAACAAGAGGGTGAAGATGGAAGGTGAAGAACAACAACTCAAAACAAGGGCAAAATATCTGGGTTTGGGAAAACACAGTGAGCCCAAAATGCATAATTGCTCCATTTGTGGTCAAGGTTTCTCTCTGGGCCAGGCCTTGGGAGGACACATGAGAAGACACAGAGCTTCGACCAACGATGTTTTCTCTTCCATAAACCAGGTTGTTGCAAAAGTTTCGGTTTTAAAAAGATCGTGTAATGACAAGGTTTTCTACTTGGACCTCAACTTAACTCCCCTCGAGAATGACTTGAAATTGTTGTTGTTCGGGAAATTGTCACCCAAAGTTAATCTTTCTTCCTTCTGA 531 0.435 MKRQRENEVTTLESWDMQICSTSITPDTSVSSSTISPEDVFECKTCNRKFNSFQALGGHRACHNKRVKMEGEEQQLKTRAKYLGLGKHSEPKMHNCSICGQGFSLGQALGGHMRRHRASTNDVFSSINQVVAKVSVLKRSCNDKVFYLDLNLTPLENDLKLLLFGKLSPKVNLSSF 176
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01130 176 Gene3D Classic Zinc Finger 71 144 - -
Gma13g01130 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gma13g01130 176 Pfam C2H2-type zinc finger 40 65 - -
Gma13g01130 176 Pfam C2H2-type zinc finger 94 118 - -
Gma13g01130 176 SMART c2h2final6 94 116 IPR013087 -
Gma13g01130 176 SMART c2h2final6 41 63 IPR013087 -
Gma13g01130 176 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Gma13g01130 176 SUPERFAMILY beta-beta-alpha zinc fingers 40 116 IPR036236 -
Gma13g01130 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Gma13g01130 176 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 30 171 - -
Gma13g01130 176 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Gma13g01130 176 Gene3D Classic Zinc Finger 37 64 - -
Gma13g01130 176 PANTHER ZINC FINGER PROTEIN ZAT5 30 171 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma13g01130 Gma-Chr13 25447725 25448472 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01130 1 173 C2H2 Transcription Factor Family AT3G53600 45.055 3.26e-38 127
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g01130 zf-C2H2_6 5e-09 CL0361
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00423 10 4070869 4072611 Gma13g01130 13 25447725 25448472 GST