Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01119 ATGGGAGAAGAAGTGGTTTGTGTGCATGCATTAGAAGAAGGAAAGCAGGAGAACAATGAGGAGTCAAGGACGGAACTGAAGCGTGACTACGACCAATGCGTTGCTGATACTGAACCTCACCTGTCTCCTAATAAGAAACAAGCGAAAGAAGTTTCCAATGATGAAGTGCGCTCTGAGGTTTCTAACCCCAACGTTTCTGCAGCAGAGCTTGCGCAAACTTTTCAAGATATCAGTAGCCAACCAACTGAATCCGAAAATGTCAACCATGCAGAGTGTGGGGAACTGACGTCTACTTGTTTGGAGAATTCAAGTTCTGATGAGACCTTGAGTGATGAAGCCGGTGAACAGaataataataataataataataataCTTCTCAGAGTGATAAGGACACAAGTAGTGCTGCAATGACATCCCGTGTAGTGATGGAAATCCCCAAGCATGCGAGTTCATCTGGTATCAGGAAAATTACTTTTAAGTTCAGTAAGAAGAAGGAGGACTATGATTACCAACCGCCTCCACCTATGCACCATCCTGCTCTTTACAATGATGGCAATTACATTGGCTTTCATGGGGATGATGAAGAATATTTGGCAAGGGATGATTGTAGTGGTGGGTCGTTAGAAAGCCCGTGTGGAATGGGATATGTTCGTGATGGAGATTTGGACTTGTACACTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTCCCCAACTGCTACCCTACAAATGTCAAAAAGCTTTTATCAACTGGCATCCTTGACGGAGCTGTAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGGTGGCGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTCGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTCTACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAGGCTTGGAAAGAAAGTCTTCTACAAAGCAATGGCAAGGTTCAGGCTCATAAAAGTTATAGCACCAAACTTGTCGGTATGCCTCATACAAACATAAGTCAATCTGTAGAAAGTACAAGCCATTTGTCATCTTTGCATGTACCGAGTCATTATGAGCAGCACATGTATATGAATCAGACAACTGATGAATGGAAGCGTGTGGTGAAAAAGCCAAGCTCCTACACTTCTAACTCAGGTGTACTGCAGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTACACAGGTTGCTTTTTATGCCAAATGGGCTACCAGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAACGGGATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGACATAGCTCTATCGTTGGCAAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCCAGGGCATTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTATAGATAATGCTGGTAATGGAAGAGAATCTTCTATTGTGAGGCCAATCATGATACGATTGACACGCGTTGATAAAACACCAGAAGTTGAAATGGGAGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAACGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGGGACATGGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGCTGCTCTACAGAATTCAGTTTCTGCTGGAGCAGAAATTATACCAGCTTCCTTTTCAGAACTAATAATCAGGAAGCATGAGGACAAGGGATTATGTACCTATGGGGCCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCTGAACATTTACCATTGCTTTCACGAGCTGCTGCAATTTTCCGAGAATGTTTTGATCCCATAGTTGCCATTTCTGGTCGTGATCTGATTCCTGTTATGGTCTACGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTATGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTTGTTGCCACAAGCAGAGCACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAACGTGGAAAAGTTGGTGCTTCCTGCAGCCGGGGATGCTGAATCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGTGAAGATCAGTTATCCAAACATCTCAGAGAGGTGCAGCTAACACTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCTGGCTATAGAATGA 2670 0.4217 MGEEVVCVHALEEGKQENNEESRTELKRDYDQCVADTEPHLSPNKKQAKEVSNDEVRSEVSNPNVSAAELAQTFQDISSQPTESENVNHAECGELTSTCLENSSSDETLSDEAGEQNNNNNNNNTSQSDKDTSSAAMTSRVVMEIPKHASSSGIRKITFKFSKKKEDYDYQPPPPMHHPALYNDGNYIGFHGDDEEYLARDDCSGGSLESPCGMGYVRDGDLDLYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSLLDEVIKNVAGSSVNEESFQAWKESLLQSNGKVQAHKSYSTKLVGMPHTNISQSVESTSHLSSLHVPSHYEQHMYMNQTTDEWKRVVKKPSSYTSNSGVLQKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCIDNAGNGRESSIVRPIMIRLTRVDKTPEVEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDMGLCELEELPKDKWFCCDDCNRIYAALQNSVSAGAEIIPASFSELIIRKHEDKGLCTYGAMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNYVVVSAGLLRIFGRNVAELPLVATSRAHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQLAIE 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01119 889 MobiDBLite consensus disorder prediction 1 35 - -
Gma13g01119 889 SUPERFAMILY FYVE/PHD zinc finger 614 670 IPR011011 -
Gma13g01119 889 ProSitePatterns Zinc finger PHD-type signature. 545 584 IPR019786 -
Gma13g01119 889 SMART PHD_3 544 585 IPR001965 -
Gma13g01119 889 SMART PHD_3 617 674 IPR001965 -
Gma13g01119 889 SUPERFAMILY FYVE/PHD zinc finger 540 587 IPR011011 -
Gma13g01119 889 MobiDBLite consensus disorder prediction 1 87 - -
Gma13g01119 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 532 613 IPR013083 -
Gma13g01119 889 ProSitePatterns Zinc finger PHD-type signature. 618 673 IPR019786 -
Gma13g01119 889 Gene3D - 765 872 - -
Gma13g01119 889 MobiDBLite consensus disorder prediction 100 137 - -
Gma13g01119 889 Pfam Tify domain binding domain 273 327 IPR032308 -
Gma13g01119 889 Pfam Tify domain binding domain 478 527 IPR032308 -
Gma13g01119 889 PANTHER AUTOIMMUNE REGULATOR 2 885 - -
Gma13g01119 889 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 768 860 IPR016181 -
Gma13g01119 889 MobiDBLite consensus disorder prediction 57 87 - -
Gma13g01119 889 ProSiteProfiles Zinc finger PHD-type profile. 542 587 IPR019787 -
Gma13g01119 889 MobiDBLite consensus disorder prediction 42 56 - -
Gma13g01119 889 CDD PHD1_AIRE 544 584 - -
Gma13g01119 889 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 676 IPR013083 -
Gma13g01119 889 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 2 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01119 Gma-Chr13 25345071 25354540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01119 1 884 PHD Transcription Factor Family AT3G53680 52.222 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01119 - - gmx:100808999 1786.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00414 10 3984355 3993699 Gma13g01119 13 25345071 25354540 GST