Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01113 ATGGCGGCGGCGTCGCGGAGGCTCCGGGACCTGCAGTCCGAGGCCGGGAACAAGATCTGCGTTGACTGCTCCCAGAAGAACCCGCAGTGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTCGAATGCTCCGGCAAGCACCGTGGCCTCGGCGTCCACATCTCCTTCGTCCGATCGGTCACCATGGACTCCTGGTCCGACATCCAGATCAAGAAAATGGAAGCCGGCGGCAACGACAAGCTCAACGCATTCCTCGCACAGTACTCCATCCCCAAAGAAACCGACATCGTTACGAAGTACAACACCAACGCCGCTTCTGTTTACCGCGACCGGATCCAGGCCATCGCCGAGGGCCGCCCCTGGCGCGATCCGCCGGTGTTGAAGGAAAACCTCTCCGCCGCCGGAAAGGGGAAGCCGCCGCTGACGCAAACGCGGAGGAATAATAATGAAGGTGGATGGGATGATTGGGGTAACGAGGCGAGTCCCCGGAGCAAGAGCAAGTCGACCGGGGATTTTAGGAATTTGAACGGCGGCGGCGGAGCGCCGGCGAGGTCGAGGTCGACGGAGGATATCTACACGCGGACGCAGCTGGAGGCGTCGGCTGCGAAAAAGGAGGACTTCTTCGCGAGGAAGATTGCGGAGAACGAGTCGCGGCCGGAGGGGCTGCCGCCCTCTCAGGGAGGGAAGTATGTCGGGTTTGGATCCAGTCCTCAGCCGCCTCAGCGGCGGAATGAAGCGCAAAACGATTACTTCTCTGTTGTTTCGCAGGGGATTGGTAAGTTGTCTTTGGTTGCTGCCTCTGCGGCTAATGTTGTTCAGGCTGGCACGAAGGAGTTCACTTCTAAGGTTAAGGAAGGTGGTTACGATCATAAGGTGAATGAAACTGTCAATGTTGTCACTCAAAAGACATCAGAGATTGGACAAAGGACTTGGGGCATAATGAAAGGAGTCATGGCCATGGCTTCCCAGAAGATTGAGGAGTACACTAAAGATGATCCAAACTGGAAGAATGATAACTGGCAACGAAATGAGAATGATAGAAATGGTTATTATCAGGATTTTAATCAAGAGAACAAAGGCTGGAATTCTTCTATTGGAAGAGAACAATCTTCATCAGGGCAATTTAAAACTCAAAGCTCTAGCTCTTGGGATGATTGGGACCACAACGATAGCAGGAAGGAAGTACCAGCTAAAGGATCAAGTCATTCATCAGGTGGGCTCTTTAGTACCCACAACTCAAGCTCTTGGGATGATTGGGAACACAGAGATTCTAGGAAGGAAGAACCAGCTAAAGGATCAGCTCCCCATAATAACGAGGATTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTCGATAATTATTATGAAGGTGCATCTAATAAGAAAGGTGTTGGTCATAATGGGAAATCAGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1446 0.5263 MAAASRRLRDLQSEAGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAASVYRDRIQAIAEGRPWRDPPVLKENLSAAGKGKPPLTQTRRNNNEGGWDDWGNEASPRSKSKSTGDFRNLNGGGGAPARSRSTEDIYTRTQLEASAAKKEDFFARKIAENESRPEGLPPSQGGKYVGFGSSPQPPQRRNEAQNDYFSVVSQGIGKLSLVAASAANVVQAGTKEFTSKVKEGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMAMASQKIEEYTKDDPNWKNDNWQRNENDRNGYYQDFNQENKGWNSSIGREQSSSGQFKTQSSSSWDDWDHNDSRKEVPAKGSSHSSGGLFSTHNSSSWDDWEHRDSRKEEPAKGSAPHNNEDWAGWDNAKDDGFDNYYEGASNKKGVGHNGKSDGTWTEGGFL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01113 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 - -
Gma13g01113 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 401 481 - -
Gma13g01113 481 MobiDBLite consensus disorder prediction 383 397 - -
Gma13g01113 481 MobiDBLite consensus disorder prediction 415 434 - -
Gma13g01113 481 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Gma13g01113 481 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Gma13g01113 481 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Gma13g01113 481 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Gma13g01113 481 SUPERFAMILY ArfGap/RecO-like zinc finger 6 113 IPR037278 -
Gma13g01113 481 CDD ArfGap_ArfGap1 4 118 - -
Gma13g01113 481 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 121 IPR001164 GO:0005096
Gma13g01113 481 Pfam Putative GTPase activating protein for Arf 6 104 IPR001164 GO:0005096
Gma13g01113 481 MobiDBLite consensus disorder prediction 442 456 - -
Gma13g01113 481 MobiDBLite consensus disorder prediction 213 245 - -
Gma13g01113 481 MobiDBLite consensus disorder prediction 119 190 - -
Gma13g01113 481 MobiDBLite consensus disorder prediction 344 382 - -
Gma13g01113 481 MobiDBLite consensus disorder prediction 329 343 - -
Gma13g01113 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 IPR044519 GO:0005096|GO:0016192
Gma13g01113 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 401 481 IPR044519 GO:0005096|GO:0016192
Gma13g01113 481 MobiDBLite consensus disorder prediction 329 481 - -
Gma13g01113 481 SMART arf_gap_3 2 121 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01113 Gma-Chr13 25307131 25311747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01113 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 2.69e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01113 K12492 - gmx:100806519 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00409 10 3944522 3949953 Gma13g01113 13 25307131 25311747 GST
Gma19g01633 19 45731847 45735641 Gma13g01113 13 25307131 25311747 PCT
Gma03g01583 03 42101050 42105286 Gma13g01113 13 25307131 25311747 PCT
Gma13g01113 13 25307131 25311747 Gma19g01633 19 45731847 45735641 PCT
Gma13g01113 13 25307131 25311747 Gma03g01583 03 42101050 42105286 PCT