Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01110 atggctggcaaaggagagggtccagccatcggaatcgatctcggaaccacgtactcgtgcgtcggtgtctggcaacacgatcgcgtcgagatcatcgccaacgaccaaggtaacagaacgacgccgtcttacgtcgggttcaccgacaccgagcgtctcattggtgatgccgcaaaaaatcaggtcgccatgaaccccatcaacaccgtctttgatgccaagagattgattggtcgtagattcagtgatgcctctgttcagagtgatattaaactgtggccttttaaggttttgtctggacctgctgaaaagccaatgattcaggtcagttacaagggtgaggataagcagtttgctgcagaggaaatctcttctatggtgctaatgaaaatgcgtgagattgctgaagcttatcttggctcttcaatcaagaatgccgttgttactgtccctgcttactttaacgattctcagcgtcaagctaccaaggatgctggtgttattgctggtctcaatgtgatgcgtattatcaatgagcctactgctgcagccattgcttatggtcttgacaagaaggctaccagtgtcggcgagaagaatgtcttgatttttgatctcgggggtggtacttttgatgtctctttacttaccattgaggagggtatctttgaggtgaaagccacagctggggacacccatcttggaggtgaggattttgataacaggatggtcaaccactttgttcaggaatttaagagaaagaacaagaaagatatcagtggcaaccccagagcaCTTAGGAGGTTGAGGACTGCCTGTGAGAGGGCAAAGAGAACTCTATCTTCAACTGCCCAAACCACCATTGAAATTGATTCTCTCTATGAGGGAATTGATTTCTACTCCACCATTACTCGTGCTAGATTTGAGGAGCTCAATATGGATCTCTTCCGCAAGTGCATGGAACCAGTTGAGAAGTGTTTAAGAGATGCTAAGATGGACAAGAGGACTGTCCATGATGTTGTACTTGTTGGTGGTTCCACCAGAATTCCCAAGGTGCAACAACTCCTGCAAGATTTCTTTAATGGGAAGGAGCTCTGCAAGAGCATCAATCCTGATGAGGCTGTGGCATATGGTGCTGCAGTTCAAGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTTCAGGATCTTCTCCTTCTTGATGTCACCCCTCTCTCTCTTGGGTTGGAAACTGCTGGTGGGGTGATGACAGTCTTGATCCCCAGGAACACTACTATCCCAACAAAGAAAGAACAGGTTTTCTCAACCTATTCTGACAACCAGCCTGGTGTGTTGATCCAGGTTTATGAAGGTGAGAGAACAAGGACTAGAGATAACAACTTGTTGGGCAAATTTGAACTTTCTGGCATTCCTCCAGCTCCCAGGGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTCTCTGCCGAAGACAAAACTACCGGCCAAAAGAACAAGATCACCATTACCAATGACAAGGGTAGGTTGTCAAAGGAAGAGATTGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAATCAGAAGATGAAGAGCACAAGAAGAAGGTAGAGGCCAAGAATGCATTGGAGAACTACTCATACAACATGAGGAATACCATTAAAGACGAGAAGATTGGAGGAAAACTTGACCCAGCTGACAAGAAAAAGATTGAGGATGCCATTGAGCAGGCCATCCAGTGGCTAGACAGCAACCAGCTTGGAGAGGCAGATGAATTTGAGGACAAAATGAAGGAGTTGGAAAGCATCTGCAACCCTATCATTGCCAAGATGTACCAGGGTGGTGCTGGTCCAGACGTGGGTGGTGCAATGGACGATGATGTTCCTGCTGCTGGAAGCGGTGCGGGGCCAAAGATTGAGGAAGTAGACTAA 1947 0.2727 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDIKLWPFKVLSGPAEKPMIQVSYKGEDKQFAAEEISSMVLMKMREIAEAYLGSSIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYSYNMRNTIKDEKIGGKLDPADKKKIEDAIEQAIQWLDSNQLGEADEFEDKMKELESICNPIIAKMYQGGAGPDVGGAMDDDVPAAGSGAGPKIEEVD 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01110 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Gma13g01110 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Gma13g01110 648 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Gma13g01110 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Gma13g01110 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Gma13g01110 648 Gene3D - 545 619 IPR029048 -
Gma13g01110 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Gma13g01110 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Gma13g01110 648 Gene3D - 192 366 - -
Gma13g01110 648 Gene3D - 71 126 - -
Gma13g01110 648 Coils Coil 521 541 - -
Gma13g01110 648 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
Gma13g01110 648 Gene3D - 10 384 - -
Gma13g01110 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Gma13g01110 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Gma13g01110 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Gma13g01110 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Gma13g01110 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Gma13g01110 648 MobiDBLite consensus disorder prediction 619 648 - -
Gma13g01110 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01110 Gma-Chr13 25281936 25285036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01110 1 648 Calmodulin-binding Proteins AT3G12580 91.859 0.0 1222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01110 K03283 - gmx:100804917 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01629 19 45711360 45714358 Gma13g01110 13 25281936 25285036 PCT
Gma03g01577 03 42049249 42052324 Gma13g01110 13 25281936 25285036 PCT
Gma13g01110 13 25281936 25285036 Gma19g01629 19 45711360 45714358 PCT
Gma13g01110 13 25281936 25285036 Gma03g01577 03 42049249 42052324 PCT