Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01103 ATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAAAGCCAGAACCAACGACCCTTCAGAAAGCCGCCGCAGCCGCCGGAGGCCAACGGCGGCGACGGCGCCATTTCGGCGAGGGAGATTCGATCATCTGAAGCAGAAAACTACAATAATAGCCAACACTTGTTCATGCAAGAAGACGAAATGGCGGCGTGGCTGCACTATCCAATCCACGAAGATCCTCCACCCTTCGATCACCACGATTTCGGCGCCGACATCTTCTACCCGCCGCCAAACGCCACCGCGAGCCAGAATCGCGGCAGCGCCGCCGTGCAGTCCTCCTTTCGCACGACAGAGCTCTGGCATCCGGCTCCTCGACCTCCGATTCCGCCGCCGAGGCGGCCGGAGCATGCGCCGAGCAGGATACACAATTTCGCGCACTTCACGAAGCACGGCAATGCGTCGTCGAGCTCGAAGGCGGCCGCGGCGGCGCAGCCGACGGTGGTGGATTCTTGCGAAACGCCGGTCGCGACGGCGGAGCACGCGGAAACCGGCCGCGCCAGAGCCGCCGCCGGCAAAACCGCGGTGTCGGACGGCGGGAGAGAGACGGCGACGTGCGACGTGACGGTGACGTCATCGCCTGGCGATTCGAGCGGGAGTGCCGAACCGGTCGAGAGAGAACCGATGGCGGACCGGAAGAGGAAGGGAAGGGAACATGAGGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCCGAAGCTAAAAAGCAAGTTCATGGTTCTACATCTACAAAGAGATCTCGTGCTGCAGAAGTCCATAATCTCTCTGAGAGGCGCCGTCGAGATAGAATTAATGAAAAGATGAAAGCTTTGCAAGAACTTATACCTAGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATATGGCATGGTACCTATGATGTTTCCTGGAATACAGCAGTATATGCCACCaatgggaatggggattgggatggggatgggcatggaaatgggaatgggaatgAACAGACCAGTAATGCCATTTACCAATATGTTAGCTAGTTCGACTTTGCCAGCAGCAACTGCGGCTGTTCATTTGGGACCAAGGTTTCCTATGCCTCCTTTCCATATGCCCCATGTTGCTGCACCCGATTCATCCAGAATGCAAGGAGCAAATCACCCAGATAATAATATGCTTAACTCACTTGGTACACTAGATCCAGATCAATCACGTATCCCAAACTTCACTGATCCTTATCAACAGTACCTCGGTCTCCAACAGGCACAGTTACAATTAATGCAGACAATGAACCAACAAAATGTCAGCAAGCCTAGTAGCAGTAGAGGTCAAGAGAATCCAGAAAAGCATCAGTCAGACGAAACATGA 1431 0.5157 MELLWQNGQVVMQSQNQRPFRKPPQPPEANGGDGAISAREIRSSEAENYNNSQHLFMQEDEMAAWLHYPIHEDPPPFDHHDFGADIFYPPPNATASQNRGSAAVQSSFRTTELWHPAPRPPIPPPRRPEHAPSRIHNFAHFTKHGNASSSSKAAAAAQPTVVDSCETPVATAEHAETGRARAAAGKTAVSDGGRETATCDVTVTSSPGDSSGSAEPVEREPMADRKRKGREHEESEFQSEDVDFESPEAKKQVHGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGYGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMGMNRPVMPFTNMLASSTLPAATAAVHLGPRFPMPPFHMPHVAAPDSSRMQGANHPDNNMLNSLGTLDPDQSRIPNFTDPYQQYLGLQQAQLQLMQTMNQQNVSKPSSSRGQENPEKHQSDET 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01103 476 MobiDBLite consensus disorder prediction 113 132 - -
Gma13g01103 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 312 IPR011598 GO:0046983
Gma13g01103 476 MobiDBLite consensus disorder prediction 448 463 - -
Gma13g01103 476 MobiDBLite consensus disorder prediction 404 431 - -
Gma13g01103 476 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 475 IPR031066 -
Gma13g01103 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 341 IPR036638 GO:0046983
Gma13g01103 476 Pfam Helix-loop-helix DNA-binding domain 267 313 IPR011598 GO:0046983
Gma13g01103 476 MobiDBLite consensus disorder prediction 13 35 - -
Gma13g01103 476 SMART finulus 269 318 IPR011598 GO:0046983
Gma13g01103 476 MobiDBLite consensus disorder prediction 197 212 - -
Gma13g01103 476 MobiDBLite consensus disorder prediction 400 431 - -
Gma13g01103 476 MobiDBLite consensus disorder prediction 167 277 - -
Gma13g01103 476 MobiDBLite consensus disorder prediction 448 476 - -
Gma13g01103 476 Gene3D - 258 321 IPR036638 GO:0046983
Gma13g01103 476 Coils Coil 269 289 - -
Gma13g01103 476 MobiDBLite consensus disorder prediction 218 250 - -
Gma13g01103 476 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 475 - -
Gma13g01103 476 CDD bHLH_AtPIF_like 263 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01103 Gma-Chr13 25215347 25221084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01103 1 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.520 5.03e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g01103 HLH 5.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01103 - - gmx:100788491 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00399 10 3862085 3866565 Gma13g01103 13 25215347 25221084 GST
Gma03g01570 03 42001615 42007907 Gma13g01103 13 25215347 25221084 PCT
Gma13g01103 13 25215347 25221084 Gma03g01570 03 42001615 42007907 PCT