Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01089 ATGTCAACTTCTCCTGTCTTCCTTTTCGCTCTCCTTTTCTCTTTCTCAGTGAACTCGGTTTCTATGAATGTGCTATTTGCTTCAGCTGAACGAGCTAAAATGTGGTTGGTTAAACTTTCTTCTGGACCATCTTTTGCTCCTGTGCAATCTCCATCTTATCAAGCTTGTAGCCAAATCTGTACAGATCCATTAACTGCAACTCCTTTTGGTTCACCCTGTGGTTGTGTATTTCCCATGAAAATCAGACTAGTACTGGATGTGGCTCCTTTGGCTGTTTTTCCAGTAATTGATGAGTTGGAGATTGAACTTGCATCTGCGACATATTTGAAGCAGAGCCAGGTGAGGATAATGGGTGTCACTTCTGACAGTCAAAGTCAGGGAAGAACCATAGTTGATATTAACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACAGCAGTTCTGTTGTGTAAGAGGTTTTGGCACAACGAAGTTCCTCTTATTAGGAGCCTTTTTGGTGATTATGCCATCTTGTATATTACTTATCCAGGTAGTTGTTTCATTGCTCCTAATGACATTTACTTTATTCTTATCATATGTTACTGCTCGAGACTAAAGCAGTTGGTATCAGGTATACCATCAGCGCTGCCACCTGAAACCATAATTGGGAGAGGTCACATGCCCAGGGAGAGTGTTAATGTTCTCCCAATCACTGCAGATATGAACAGCGAGAATGAGAAGATGAATCTTAGAACTATAATCATCATTGCTCTATCTTCTGTTATACTCTTGTTGGTTTTGGTTGGAGCATTTTACATCATTTTGAAATGGAGGGAAATTAGGAGACCATCAGGTGCTGTTGGCCCTGCATTCAAATCATATCTAAACAAGAGATCTGGCATGGAATATATGTTGTCAAGCAGAATTATGAGCTCAAGATCTATGTCCCTTGTGTCCACTCTCGCTCATTCTATTCTCTCTGTTAAAACATTTTCCTTTTCTGAGCTTGAGAAAGCAACTGCTAAGTTCAGTTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGGCGTGTTTATTGTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAACTGCTAACAAGGGATGGTCAGAATAGAGACCGTGAATTTGTCGCCGAAGTGGAGATACTAAGCCGCTTGCATCATCGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTACTTGGTGTATGAGCTTGTTCACAATGGTAGTGTTGAGTCTCATTTGCATGGTGATGACAAGAAAAAGAGCCCTCTAAATTGGGAAGCACGGACAAAAattgctcttggagctgcaagaggattggcttatctacacgaggattctattcctcgtgtaattcaccgagattttaaagctagcaatgttctgttagaagatgactttacccccaaggtttctgattttggattagcAAGAGAAGCGACTGAAGGAAAGAGTCATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGTCATTTACTCGTTAaaagtgatgtttatagttttggtgttgtgctgcttgaacttctaaccggcaggaaaccagtggACATGTCTCAACCTCAGGGACAGGAGAATCTTGTAATGTGGGCTCGACCAATGTTGAGAAGTAAAGAAGGTTTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGCTATGACTTTGATGACATGGCAAAGGTGGCTGCTATTGTTTCCATGTGTGTACACCCGGAGGTCAGTCAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCTACAACGACACCAATGAGAGTAACAATGAGTCTTCTGCCTGGGCCTCGGATTTTGGAGGGGAACTTGTCTTTTCTGATAGCAGTTGGTTGGATGCTGAAGAGGTAACTCAAAGATTAGCTTATGGACAAGCATCTACCTTAATCACAATGGATTACAGTTCTGGTCATCTTGAAATGATGGAAAACAGACCGTTTTCAGCTTCAAGCTTCAATGGAGATGAGATTTCTTTGCCGATGGGGCACCAGGTTAGATCAGACCCCTTGAGAACTGCTCAGAGTAAGCTAACATTTTATAAGCTTACTCGATGTCAGAGTGAACATGTGGTACATCCTTCCAAACGTGTTTGGAATGATGATGGTTACTGGGTTTAA 2208 0.3809 MSTSPVFLFALLFSFSVNSVSMNVLFASAERAKMWLVKLSSGPSFAPVQSPSYQACSQICTDPLTATPFGSPCGCVFPMKIRLVLDVAPLAVFPVIDELEIELASATYLKQSQVRIMGVTSDSQSQGRTIVDINLVPLGEKFDNTTAVLLCKRFWHNEVPLIRSLFGDYAILYITYPGSCFIAPNDIYFILIICYCSRLKQLVSGIPSALPPETIIGRGHMPRESVNVLPITADMNSENEKMNLRTIIIIALSSVILLLVLVGAFYIILKWREIRRPSGAVGPAFKSYLNKRSGMEYMLSSRIMSSRSMSLVSTLAHSILSVKTFSFSELEKATAKFSSQRVLGEGGFGRVYCGTLDDGNEVAVKLLTRDGQNRDREFVAEVEILSRLHHRNLVKLIGICIEGPRRYLVYELVHNGSVESHLHGDDKKKSPLNWEARTKIALGAARGLAYLHEDSIPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGKSHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSFGVVLLELLTGRKPVDMSQPQGQENLVMWARPMLRSKEGLEQLVDPSLAGSYDFDDMAKVAAIVSMCVHPEVSQRPFMGEVVQALKLIYNDTNESNNESSAWASDFGGELVFSDSSWLDAEEVTQRLAYGQASTLITMDYSSGHLEMMENRPFSASSFNGDEISLPMGHQVRSDPLRTAQSKLTFYKLTRCQSEHVVHPSKRVWNDDGYWV 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01089 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Gma13g01089 735 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 53 179 - -
Gma13g01089 735 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Gma13g01089 735 Pfam Protein tyrosine and serine/threonine kinase 339 609 IPR001245 GO:0004672|GO:0006468
Gma13g01089 735 SUPERFAMILY Protein kinase-like (PK-like) 321 610 IPR011009 -
Gma13g01089 735 ProSiteProfiles Protein kinase domain profile. 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01089 735 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 204 731 - -
Gma13g01089 735 PANTHER OS01G0750732 PROTEIN 53 179 - -
Gma13g01089 735 PANTHER OS01G0750732 PROTEIN 204 731 - -
Gma13g01089 735 Gene3D Phosphorylase Kinase; domain 1 310 412 - -
Gma13g01089 735 CDD STKc_IRAK 343 612 - -
Gma13g01089 735 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01089 Gma-Chr13 25010724 25018128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01089 57 630 Receptor kinase-like Gene Family AT5G56890 54.362 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gma13g01089 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01089 - - gmx:100784243 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00388 10 3661049 3667882 Gma13g01089 13 25010724 25018128 GST
Gma19g01614 19 45523381 45529831 Gma13g01089 13 25010724 25018128 PCT
Gma03g01559 03 41822798 41828729 Gma13g01089 13 25010724 25018128 PCT
Gma13g01089 13 25010724 25018128 Gma19g01614 19 45523381 45529831 PCT
Gma13g01089 13 25010724 25018128 Gma03g01559 03 41822798 41828729 PCT