Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01085 ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCATTAACCGAAACCGAGAAGGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTGCAGCCTTTGAATTCAAGGAAAAGGGTAATCAATATGTGAAGATGGGCAAGAAGCATTACTCTGATGCCATTGATTACTACACGAGGGCAATTGATCAGAAAGCCTTGAGTGACTCTGAGACCTCTATTCTCTTTGCAAATAGAGCCCATGTGAATTTGCTTCTAGGGAATCTTAGACGTGCTCTAACAGATTCTAATGAGGCCCTCAAGTTGTGCCCTTCAAATATAAAGGCAATTTATAGAGCTGCGAAAGCTTCTCTTTCACTAAACATGTTGGCTGAAGCAAGAGAGTATTGCTTGAAGGGTCTTCAGTTTGACCCCAATAATGAGGACTTGAAGAAGCTTGACCGGCAGATCGGTCTCAAGATATCAGAGAAGGAAAAGCATGAGGCTGAAGCCTCCAAGGCTGTCGCGGAGACAAAGAAACTTGTGTCTGCGATTGAAAATAGAGGCTTGAAGATTGGAAAGGCAATGTATCTAGAACTTACTGGACTACGGAAACCTGTGTTGGATAAAAGTAATATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCGGTTCACCTTGATATGATATTTTCAGAAGATCAGCCGTTGTCATGGGATGTTGAAAACAACTACAAACGTGAATTTATTGAATTATACTATGAGCAGACTGGTTCTGGACTTTGTCTATCAAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTGCTCACAGGGAAGGTGTTGGTGATGAAGAGAAAGACACAGTTGAGGATTATAAGCAACACATGGGTTCCCCTAAATGGATCAAAGTGAATGAAAGGAGAACACTCCACGATGTTCTCAAAGAGCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCTAAGCGATCCAGCTTTTATGGCAAGTTCAAAGCTGGGAAGTGGGCACCTCCAAGTATATGA 1086 0.4245 MALWMEKGSEPLTETEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDYYTRAIDQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAIYRAAKASLSLNMLAEAREYCLKGLQFDPNNEDLKKLDRQIGLKISEKEKHEAEASKAVAETKKLVSAIENRGLKIGKAMYLELTGLRKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMIFSEDQPLSWDVENNYKREFIELYYEQTGSGLCLSKEKLLHCLLEGTAAAHREGVGDEEKDTVEDYKQHMGSPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKRSSFYGKFKAGKWAPPSI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01085 361 Pfam Cns1/TTC4 Wheel domain 201 270 IPR044059 GO:0051879
Gma13g01085 361 SUPERFAMILY TPR-like 22 157 IPR011990 GO:0005515
Gma13g01085 361 SMART tpr_5 31 66 IPR019734 GO:0005515
Gma13g01085 361 SMART tpr_5 71 104 IPR019734 GO:0005515
Gma13g01085 361 SMART tpr_5 105 138 IPR019734 GO:0005515
Gma13g01085 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 357 - -
Gma13g01085 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 357 - -
Gma13g01085 361 Coils Coil 141 170 - -
Gma13g01085 361 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Gma13g01085 361 Gene3D Tetratricopeptide repeat domain 27 174 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01085 Gma-Chr13 24986322 24991159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01085 30 160 Calmodulin-binding Proteins AT3G25230 33.099 5.95e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01085 K24927 - gmx:100783179 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00384 10 3630136 3634486 Gma13g01085 13 24986322 24991159 GST