Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01082 ATGGGTGTCGCACGTTTTTTCCATGATGTCCTAGGATTGCCCGTGTTGGAACTTGCGACAATCTGCATGAACCTGACTTTTGTACTTTTGTTTCTCTTTGTTGTCTCGGTGAGGCGTGTTCTTGTGTATGGGGGTGGATTTCGATTCGGTAAGGATGGAAACAGCGGCAATGCTAGCCCAATTTGCAGTGTCATTGATGAAGAAACGCGTGGTGTTAGAATCGGTGTGGGGTTCAAGTTGTCAGTGTTGTCTTGTTTCTATGTTCTGTTTGTGAATGTTTTGGCGTTGGGATTTGAAGGGGGTGCTTTGATTTGGGGTGAGGCTAATGGGGATGCTGACGTGGATTTGTCTCTTCTTGCTGTCCCTGCTGCACAGGGTTTGGCTTGGTTTGTGTTGAGCTTCTCGGCCTTGTATTGCAAGTTCAAGGTGTCAGAGAGGTTCCCATTTTTGTTGAGAGCTTGGTGGTTTTTGTCCTTTGTTATTTGCTTGTGTACTTTGTATGTTGATGGGAGAGGATTTTGGGAGGAGGGTTCTGAACATCTATGTTCTCGTGCTGTTGCAAATGTTGCTGTCACACCAGCTCTTGCATTTTTGTGTGTGGTTGCAATTAGGGGTGGTACTGGTATAAGGGTTTGTGGGAACTCTGATCTTCAAGAGCCATTGCTTGTTGATGAGGAACCGGGGTGTCTCAAGGTTACTCCTTATAGAGATGCTGGACTTTTTAGTTTGGCCACTCTTTCTTGGCTGAATCCACTTCTTTCCATTGGTGCTAAGAGACCGCTCGAGCTTAAGGATATTCCACTTGTTGCACCAAGAGATAGAGCCAAGACTAGTTATAAGGTTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATGAGAATCCCTCTAAGCAGCCTTCGTTGGCTTGGGCGATTCTCAAGTCATTCTGGAAGGACGCAGCCCTGAATGCcatctttgctggtatgaatactttggtgtcatatgtaggtccatacatgataagttactttgtggattacttgggtggcaaggagactttcccccatgagggatatatccttgctggtattttctttgtggcaaagcttgtggagactgtgacaactaggcagtggtatctgggagtggacatcttgggtatgcatgttaggtctgctctaactgcaatggtatataggaagggacttagactgtcaagctcagccaagcagagtcacacaagtggggagattgtcaactacatggcagttgatgttcagagggtaggggactactcttggtaccttcatgacatgtggatgcttcctatgcagattgttcttgcccttttaattttgtataagaatgttggaattgcttctgttgcaacattgattgctacaatcatttccattgttgtcactgttcctgtggctagggtgcaagaagattatcaggacaaattgatggcagctaaggatgaaaggatgagaaagacatcagagtgtcttaggaatatgaggattctcaagctgcaagcttgggaggatcgatatcgattgaagttggaggaaatgcgtggagtagagttcaagtggctaaggaaagcactctattctcaggcttgcataactttcatgttctggagctcccctatatttgtttcagctgttacttttgctacttccatattgttggggggtcagttgacagcaggtggtgttctctctgctctagctactttcaggattctccaagaacctctgaggaattttcctgacttggtatcaaccatggctcagacaaaagtttctcttgatcgcatatctgctttcctgcaggatgaagaattgcaggaagatgcgactatcgtcttgccacctggcatttctaacacggccatagaaattatggatggtgtcttctgctgggactcttctttgccaaggcctactctatcgggaatacatgtgaaagtggaaagagggatgactgtggctgtttgtggcatggttggttccggtaaatcaagttttctttcttgcatccttggagagattcccaagctgtctggTGAAGTAAAAATGTGTGGTTCTGTTgcatatgtctcccaatctgcttggatacagtcaggaaatatagaagaaaatatcctgtttggcaccccaatggacaaagcaaagtacaagaatgttcttcatgcttgctcattgaaaaaggacctagaacttttctcacatggagaccaaacaattattggtgacagaggtataaatttgagtggtggtcagaagcagcgggttcagcttgctcgagcactctaccaagatgctgatatttacctacttgatgatcccttcagtgcagttgatgcccacactggatcagaattatttaggGAGTATGTATTGACAGCACTAGCAGATaaaacagtcattttcgtgacccatcaagttgaatttcttcctgctgctgatatgataatgGTTCTTAAAGAAGGCCACATCATACAGGCAGGAAAATATGATGATCTTTTACAAGCCGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTAATCACTCAGAAGATTCAGATGAAAATGTACCCTTGGATGACACTATTATGACCAGTAAGACATCCATTTCTTCTGCAAATGATATTGAGAGTTTGGCTAAGGAAGTTCAGGAGGGATCATCAGATCAGAAAGTAATTAAGGAGAAGAAGAAAGCAAAACGCTCGAGAAAAAAAcagcttgttcaggaagaggagagggttagaggtagagtcagcatgaaggtgtacttgtcatacatggctgcagcatacaaaggtgtattgattccactcataatcattgcacaaacattatttcagttccttcagattgccagtaattggtggatggcttgggcaaatcctcaaactaagggagaccaacccaaagtaactcccacagttcttcttcttgtttacatggcccttgcttttggcagctcatggttcatctttgtaagggctgttctcgtggctacatttggtctagcagctgcacagaaactattttttaacatgcttagaagcatattccattcaccaatgtctttctttgactctacaccagctggaaggatcttgaatcgtgtttcaattgatcaaagtgttgtggatcttgatattccttttagacttggagggtttgcttcatcaacaatacaacttattggcattgttgctgtaatgacagatgttacatggcaagttttGCTCCTAGTAGTCCCGTTGGCTATTATTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAATTAGTACGTATCGTGAGCATCCAAAAATCTCCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATTAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTGGATTGTTTTGCACGACCATTCTTCTGTAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACCTTTGTTTTTGCTTTCTGCCTGGTATTACTTGTCAGCCTTCCCCATGGAAGTATTGATCCCAGCATGGCTGGACTTGCAGTAACATATGGCCTGAATTTAAATGCACGTCTATCACGATGGATACTTAGCTTTTGCAAACTTGAAAATAAAATCATATCCATTGAAAGAATTTATCAATACAGCCAAATTCCTAGTGAAGCACCAGCAATTGTTGAAGATTCTCGTCCTCCATCCTCATGGCCTGAGAATGGGACAATCCAATTAATTGATCTGAAGgtacgttacaaggaaaatcttcccgtggtgcttcacggagtatcctgcacatttcctggtgggaagaagattggaatagttggtcgtactggcagtggcaaatctaccttgattcaagcattatttcgattggttgaaccggaggcagggagtatccttatagacaacattaatatttcatcaattggtcttcatgatcttagaagtcatttgagtatcataccacaagatccaaccttatttgaaggcaccattcgaggcaatcttgatcctcttgatgagcactctgataaagagatttgggaggcccttgataagtcacaacttggagatataatccgtgagacagagcgaaagcttgatATGCCAGTGCTGgagaatggagataattggagtgtaggacagtgtcaacttgtttctttgggtcgagctctgctgaagcaatcaaagatacttgtacttgatgaagcaacggcatcggttgatactgctactgataatcttatccagaagattattcgaagagagtttagagattgcactgtgtgcactattgcacatcgtattcctactgttattgacagtgatctagtgctggtactcagtgatgGTCGAGTTGCAGAGTTTGATAGTCCATCTAGGCTGTTAGAGGACAAGTCATCTATGTTTCTGAAGTTGGTGACGGAGTATTCATCGCGGTCAAGTGGCATACCAGACTTTTAA 4554 0.1864 MGVARFFHDVLGLPVLELATICMNLTFVLLFLFVVSVRRVLVYGGGFRFGKDGNSGNASPICSVIDEETRGVRIGVGFKLSVLSCFYVLFVNVLALGFEGGALIWGEANGDADVDLSLLAVPAAQGLAWFVLSFSALYCKFKVSERFPFLLRAWWFLSFVICLCTLYVDGRGFWEEGSEHLCSRAVANVAVTPALAFLCVVAIRGGTGIRVCGNSDLQEPLLVDEEPGCLKVTPYRDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPRDRAKTSYKVLNSNWERLKAENENPSKQPSLAWAILKSFWKDAALNAIFAGMNTLVSYVGPYMISYFVDYLGGKETFPHEGYILAGIFFVAKLVETVTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPMQIVLALLILYKNVGIASVATLIATIISIVVTVPVARVQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRLKLEEMRGVEFKWLRKALYSQACITFMFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISAFLQDEELQEDATIVLPPGISNTAIEIMDGVFCWDSSLPRPTLSGIHVKVERGMTVAVCGMVGSGKSSFLSCILGEIPKLSGEVKMCGSVAYVSQSAWIQSGNIEENILFGTPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALADKTVIFVTHQVEFLPAADMIMVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSEDSDENVPLDDTIMTSKTSISSANDIESLAKEVQEGSSDQKVIKEKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGVLIPLIIIAQTLFQFLQIASNWWMAWANPQTKGDQPKVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFHSPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASSTIQLIGIVAVMTDVTWQVLLLVVPLAIICLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCLVLLVSLPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIVEDSRPPSSWPENGTIQLIDLKVRYKENLPVVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPEAGSILIDNINISSIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLDEHSDKEIWEALDKSQLGDIIRETERKLDMPVLENGDNWSVGQCQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKIIRREFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDSPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01082 1517 CDD ABCC_MRP_domain2 1269 1489 - -
Gma13g01082 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 851 IPR027417 -
Gma13g01082 1517 CDD ABC_6TM_ABCC_D1 316 603 IPR044746 GO:0140359
Gma13g01082 1517 CDD ABCC_MRP_domain1 629 828 - -
Gma13g01082 1517 Pfam ABC transporter 647 781 IPR003439 GO:0005524
Gma13g01082 1517 Pfam ABC transporter 1288 1436 IPR003439 GO:0005524
Gma13g01082 1517 Gene3D - 1254 1507 IPR027417 -
Gma13g01082 1517 Gene3D ABC transporter type 1, transmembrane domain 913 1252 IPR036640 GO:0005524|GO:0016021
Gma13g01082 1517 Gene3D ABC transporter type 1, transmembrane domain 282 612 IPR036640 GO:0005524|GO:0016021
Gma13g01082 1517 SUPERFAMILY ABC transporter transmembrane region 304 614 IPR036640 GO:0005524|GO:0016021
Gma13g01082 1517 SMART AAA_5 1297 1482 IPR003593 -
Gma13g01082 1517 SMART AAA_5 656 837 IPR003593 -
Gma13g01082 1517 Pfam ABC transporter transmembrane region 954 1198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g01082 1517 Pfam ABC transporter transmembrane region 318 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g01082 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1271 1505 IPR003439 GO:0005524
Gma13g01082 1517 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524
Gma13g01082 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 852 IPR003439 GO:0005524
Gma13g01082 1517 CDD ABC_6TM_ABCC_D2 952 1246 IPR044726 GO:0140359
Gma13g01082 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g01082 1517 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 63 1517 - -
Gma13g01082 1517 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 1517 - -
Gma13g01082 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1262 1501 IPR027417 -
Gma13g01082 1517 Coils Coil 909 929 - -
Gma13g01082 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 954 1224 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g01082 1517 SUPERFAMILY ABC transporter transmembrane region 951 1251 IPR036640 GO:0005524|GO:0016021
Gma13g01082 1517 Gene3D - 623 857 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01082 Gma-Chr13 24948513 24957495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01082 639 845 Calmodulin-binding Proteins AT2G36910 31.718 8.11e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01082 - - gmx:100781010 2949.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01600 19 45359706 45367177 Gma13g01082 13 24948513 24957495 PCT
Gma03g01546 03 41679371 41686543 Gma13g01082 13 24948513 24957495 PCT
Gma13g01082 13 24948513 24957495 Gma19g01600 19 45359706 45367177 PCT
Gma13g01082 13 24948513 24957495 Gma03g01546 03 41679371 41686543 PCT