Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01078 ATGCAGATGAAAACTCAGTTTTTCTTATACTTCTGTTGCATTTGCTGTTTCTCTTATGGCTTTGCAGATGCAGCAAATTATGAAGCATCTGCTTTATTTTCTATAAAAGAAGGCCTCATTGATCCACTGAATAGCCTGCATGATTGGGAATTGGTGGAAAAATCAGAAGGGAAGGATGCAGCTCATTGTAATTGGACGGGTATCCGGTGCAACTCAGGTGGAGCCGTAGAGAAGCTTGATCTCTCCCGCGTGAATCTGAGTGGCATTGTATCCAATGAGATACAAAGGCTAAAGAGTCTCATTTCTCTCAACTTGTGTTGCAATGAATTTTCCTCATCATTACTAATGACCTTAAATGCATCCAGCAACAATTTCTCTGGCTTTCTTCCTGAGGATTTTGGAAATTTCTCTTCCTTGGAGACTTTGGATCTCAGAGGCAGCTTCTTTGAAGGGTCAATTCCAAAATCCTTCAGTAAATTGCACAAGTTGAAGTTCCTTGGTTTATCTGGGAATAATCTCACTGgggaaagccctggtgcagcgCTGGGGAAGCTTTCATCACTGGAATGCATGATCATTGGATACAATAAATTTGAAGGAGGGATTCCAGCAGACTTTGGAAATCTCACCAAGCTGAAGTATCTTGATATAGCAGAAGGCAATCTAGGTGGTGAAATTCCAGCTGAGTTGGGAAAGCTCAAAATGTTGAATACAGTTTTCTTGTACAAAaacaaatttgaaggcaagattccatcagaaattggcaacttgacttcattggtgcagctggatctctcagacaacatgttatcaggaaatattccagctGAAATAAGTCGGCTGAAGAATTTACAGCTTCTGAACTTCATGCGGAACCGGTTATCAGGTCCTGTGCCTTCTGGCCTTGGGGACTTGCCTCAACTAGAGGTGCTTGAGCTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGAAACCTTGGCAAGAATTCACCATTGCAGTGGTTGGATGTATCATCCAACTTACTCTCTGGTGAGATTCCAGAAACTCTTTGCACCAAGGGCAATCTCACCAAGCTCATACTTTTCAATAATGCTTTCTTGGGTCCAATTCCGGCAAGCCTATCAACATGTCCTTCACTTGTTCGTTTTCGAATTCAGAACAATTTTCTTAATGGAACAATTCCTGTGGGTCTTGGTAAGCTTGGGAAGCTTCAGAGGTTAGAATTGGCTAACAATAGTCTCACTGGTGGAATTCCTGATGACATTGGTTCTTCTACATCCCTTTCTTTCATTGATTTTTCCAGAAACAACCTCCACTCTTCTCTTCCTTCAACCATTATTTCCATTCCAAATCTGCAAACTTTAATTGTCTCCAACAACAACTTGAGAGGTGAAATCCCTGACCAATTCCAGGATTGTCCCTCACTTGGTGTCCTTGATCTCTCATCAAATCGATTCTCCGGAATCATTCCATCTAGCATTGCATCATGTCAGAAATTGGTAAACTTGAACCTACAGAATAACCAATTGACTGGTGGAATCCCAAAAGAATTAGCAAGCATGCCTACATGGGCCATTCTTGATCTTGCCAACAACACTCTGAGTGGTCATATGCCCGAAAGCTTTGGTATGTCTCCAGCTCTAGAAACATTCAATGTCTCACACAACAAGCTAGAAGGTCCTGTCCCAGAAAATGGCATGCTAAGAACAATAAACCCAAATGATCTTGTGGGAAATGCTGGCTTATGTGGTGGTGTTCTCCCTCCATGTGGCCAAACCTCAGCATATCCATTAAGGCATGGGAGCTCACCTGCAAAGCACATTCTTGTAGGATGGATCATTGGAGTATCATCAATACTAGCCATTGGGGTTGCAACTTTGGTAGCAAGATCTTTATACATGATGCGGTACACTGATGGATTGTGCTTCCCAGAAAGATTTTATAAGGGTAGGAAGGTGTTGCCTTGGAGATTGATGGCCTTCCAGAGGCTTGATTTTACAAGTAGTGACATTTTATCTTGCATCAAGGATACAAATATGattggcatgggagcaactggggttgtttacaaggctgagataccacaatcaagtacaattgtggcagtcaaaaagttgaggagatcaggatctgatattgaagtaggaagcagtgatgaccttgttggagaggtgaatcttttaaggaggctaaggcataggaacattgttagactactaggctttctttacaatgacgctgatgtgatgatagtttatgaatttatgcacaatggaaaccttggagatgccctgcatggtaaacaagctgggagattgcttgtagactgggtttcccgatataacatagctctaggaatagcacaaggacttgcttatcttcatcatgactgtcatccacctgttatccatcaagacatcaagtcaaataatatactgcttgatgcaaatcttgaggcaaggatagcagattttggattggccaagatgatgctctggaagaatgaaacagtctccatgattgctggatcctatggatacattgccccagAATACGGATACTCCTTGAAAGTGGATGAAAAGATTGACATTTACAGTTATGGAGTGGTTCTGTTGGAGCTTCTCACCGGAAAGCGGTCATTAGATCCTGAGTTTGGAGAATCTATAGACATAGTAGGGTGGATTAGAAGGAAGATAGACAACAAATCTCCGGAAGAAGCATTAGACCCCAGTGTAGGAAACCGCAAGCATGTTCAAGAATAG 2763 0.3239 MQMKTQFFLYFCCICCFSYGFADAANYEASALFSIKEGLIDPLNSLHDWELVEKSEGKDAAHCNWTGIRCNSGGAVEKLDLSRVNLSGIVSNEIQRLKSLISLNLCCNEFSSSLLMTLNASSNNFSGFLPEDFGNFSSLETLDLRGSFFEGSIPKSFSKLHKLKFLGLSGNNLTGESPGAALGKLSSLECMIIGYNKFEGGIPADFGNLTKLKYLDIAEGNLGGEIPAELGKLKMLNTVFLYKNKFEGKIPSEIGNLTSLVQLDLSDNMLSGNIPAEISRLKNLQLLNFMRNRLSGPVPSGLGDLPQLEVLELWNNSLSGPLPRNLGKNSPLQWLDVSSNLLSGEIPETLCTKGNLTKLILFNNAFLGPIPASLSTCPSLVRFRIQNNFLNGTIPVGLGKLGKLQRLELANNSLTGGIPDDIGSSTSLSFIDFSRNNLHSSLPSTIISIPNLQTLIVSNNNLRGEIPDQFQDCPSLGVLDLSSNRFSGIIPSSIASCQKLVNLNLQNNQLTGGIPKELASMPTWAILDLANNTLSGHMPESFGMSPALETFNVSHNKLEGPVPENGMLRTINPNDLVGNAGLCGGVLPPCGQTSAYPLRHGSSPAKHILVGWIIGVSSILAIGVATLVARSLYMMRYTDGLCFPERFYKGRKVLPWRLMAFQRLDFTSSDILSCIKDTNMIGMGATGVVYKAEIPQSSTIVAVKKLRRSGSDIEVGSSDDLVGEVNLLRRLRHRNIVRLLGFLYNDADVMIVYEFMHNGNLGDALHGKQAGRLLVDWVSRYNIALGIAQGLAYLHHDCHPPVIHQDIKSNNILLDANLEARIADFGLAKMMLWKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGKRSLDPEFGESIDIVGWIRRKIDNKSPEEALDPSVGNRKHVQE 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01078 920 Pfam Leucine rich repeat N-terminal domain 25 71 IPR013210 -
Gma13g01078 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Gma13g01078 920 SUPERFAMILY RNI-like 78 389 - -
Gma13g01078 920 Gene3D Phosphorylase Kinase; domain 1 675 759 - -
Gma13g01078 920 SMART LRR_typ_2 401 425 IPR003591 -
Gma13g01078 920 SMART LRR_typ_2 305 329 IPR003591 -
Gma13g01078 920 SMART LRR_typ_2 449 472 IPR003591 -
Gma13g01078 920 SMART LRR_typ_2 473 496 IPR003591 -
Gma13g01078 920 SMART LRR_typ_2 257 281 IPR003591 -
Gma13g01078 920 SMART LRR_typ_2 160 183 IPR003591 -
Gma13g01078 920 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 912 - -
Gma13g01078 920 ProSitePatterns Protein kinases ATP-binding region signature. 681 705 IPR017441 GO:0005524
Gma13g01078 920 Pfam Protein kinase domain 677 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01078 920 SUPERFAMILY Protein kinase-like (PK-like) 670 891 IPR011009 -
Gma13g01078 920 Pfam Leucine rich repeat 450 510 IPR001611 GO:0005515
Gma13g01078 920 Pfam Leucine rich repeat 115 173 IPR001611 GO:0005515
Gma13g01078 920 ProSiteProfiles Protein kinase domain profile. 675 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01078 920 SUPERFAMILY L domain-like 332 584 - -
Gma13g01078 920 Gene3D Ribonuclease Inhibitor 303 596 IPR032675 -
Gma13g01078 920 Gene3D Transferase(Phosphotransferase) domain 1 760 920 - -
Gma13g01078 920 Gene3D Ribonuclease Inhibitor 25 302 IPR032675 -
Gma13g01078 920 SMART serkin_6 675 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01078 920 PANTHER UNNAMED PRODUCT 3 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01078 Gma-Chr13 24920581 24923830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01078 7 920 Receptor kinase-like Gene Family AT1G08590 56.360 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma13g01078 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01078 - - gmx:100788430 1667.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00380 10 3600692 3604179 Gma13g01078 13 24920581 24923830 GST