Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01077 ATGTCAACTGTGTCGAAAGATGACAACTTGGTGCTGTCTTCGGAGGACTCTTCGTGCCCAGAAGAGTCTGAGCTTGAATTGGGTCTTGGCTTGAGCCTCTCTTCTGGCCCTTCATCAAAGTCTCATCACCACCATGTTCATGCTCCTACAACTCTTTATGCTAGAATTTACACTGCTAAGGATTTTCCTTCTTCCGCAGCAGCAGCATCATCATCACCTTCCTCTTCTTCCTCTTCGTCTCCCAACATCACTGCCGGCACCAAGAGAGCTGCTGCTGATTCTCTTGTTGCCAATAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATAGAGTGAATAGCTTCAATAGCCATGCAAAATCAACTGAAGTATTCAACTCTGTGGCTGAGAAGAGTAAGATAAATAATACTGTGGTCAGGAAGACTAATGACAATGACAATGATAATAACATAAATGCCAAAGAAAAAAGACACCTCAGGAGTTCCCTGTTCGTCAAGGTAAATATGGACGGGATACCAATTGGAAGGAAGGTTGATTTGAGTGCCCATAGTTCCTATGAAACCTTAGCACAAACATTGGAGGATATGTTTAATGAATCAACTACAGTCACCACTTGCAAAGGATCAAATGGTGAGGATTATGGCATTATTATCGGAGGAGAAAGACATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAACATCAAACAGAGATGCAAGCCCATATAG 876 0.4361 MSTVSKDDNLVLSSEDSSCPEESELELGLGLSLSSGPSSKSHHHHVHAPTTLYARIYTAKDFPSSAAAASSSPSSSSSSSPNITAGTKRAAADSLVANNRPSQVVGWPPLRTYRVNSFNSHAKSTEVFNSVAEKSKINNTVVRKTNDNDNDNNINAKEKRHLRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGSNGEDYGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEENIKQRCKPI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01077 291 Gene3D - 160 282 - -
Gma13g01077 291 MobiDBLite consensus disorder prediction 1 46 - -
Gma13g01077 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 8 282 - -
Gma13g01077 291 SUPERFAMILY CAD & PB1 domains 160 268 - -
Gma13g01077 291 MobiDBLite consensus disorder prediction 65 97 - -
Gma13g01077 291 Pfam AUX/IAA family 60 279 IPR033389 -
Gma13g01077 291 ProSiteProfiles PB1 domain profile. 165 272 IPR000270 GO:0005515
Gma13g01077 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 282 IPR003311 GO:0005634|GO:0006355
Gma13g01077 291 MobiDBLite consensus disorder prediction 1 18 - -
Gma13g01077 291 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01077 Gma-Chr13 24915698 24919758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01077 158 279 B3 DNA Binding Superfamily AT1G59750 33.607 9.11e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gma13g01077 AUX_IAA 6.2e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01077 K14484 - gmx:100779400 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00379 10 3596128 3599997 Gma13g01077 13 24915698 24919758 GST
Gma19g01595 19 45323876 45328285 Gma13g01077 13 24915698 24919758 PCT
Gma03g01541 03 41650959 41655331 Gma13g01077 13 24915698 24919758 PCT
Gma13g01077 13 24915698 24919758 Gma19g01595 19 45323876 45328285 PCT
Gma13g01077 13 24915698 24919758 Gma03g01541 03 41650959 41655331 PCT