Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01073 ATGGCGCCAACGCCGAGTCAAAAAGAAAGAGCACTTGCGGCCTGTCGTGCTATGTCAAGTCTTGGAATTGATGATTCGAAAGTGAAGTCGGTGTTAAAGAAACTCCTCAAAGTGTATGATAAAAATTGGGAACTTATTGAGGCAGAGAACTATAGAGTTTTAGCAGATGCTATATTTGAGGATGATGATAATATGGTGCCCGAATTGAAAAAGAAAAGCCAGACAGCTGATGTGCATAACACTGGTCATTCTATGTCGTCTTCTTTTCAAAACAACCAGGAAGCAGAGACAGGGTGTGAAGAGGCTCAGATGCATGTTGAAACACCCCAACCTTTGAAAAGGTTGCGTTTACAAGGCCAGGAGAGTCAGCCTTTGCATCCTCCCCCTAACGGTTCCCCCAGCCCTTCATCAAAAAAACTTAAATTAGATGATAATGCATCTGGGAAGAAGCCTCAAAACAAACCAGTGTCTTCTGATGGGAATCCAGGGATTGCAACTCGTCCACTTCCACCACGAGATGGCATTGTTGATAAGGGGAAACAACCTGCATCACTCCCTCTTAATCACAGAGGAAGAAGACTTCCATCTGAAAGAGTGCCCCAATCTATACCGTCTAGAGAACCAACAGTTGAACCTGGGAGGTTTCTATTGCCAAACAACCAAATGCCCCGTACTCAGACACTGGTCATACCCAAGGATGAGCCTATTGATGAATTGACTGATTACGAGATGCCCATTGCAGTGATTCCCCCTGAATCAAGTGTAAGGAACTCGTCAATTAAGAATGGTGTAGCTGGAAAACATAGTGGTCATGTTACTGTGACATCATCACAAAACAGAGATGGAGTTGGAGATGAAGATGTTATTCCCACCTCAAAGAAAGAAGCGACTTGTAATGTAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTACGGCTCAGCTCTTCAGGGATCAGATTTTCATATACCTAGTCGAGATCAACTTATAAAAGTGATGGAGGATAAATGTCTGCGATCATATAAAATCACTGACCCAAATTTCTCTGTCAAGAATCTGTTGAGAGATATATGTGATTGCATGTTGGAATTCAGAAATGACTCAAATGATGACTCACAAGAAGGTTCTGTGATAAGTTCCAGTGTTGATGTGTCAAAGGAACCACGGGCACCTGGCACACTGAGTGTGGTAGGAAATAAAGATTTGGACACGTCTTCTCACTTTTCAAACGGATCCATCAATGTTAAGTCTTCTGATGACTTGGTTTCTCCCGGAAGTATCCTTCCTCTAGCCCACCCGAATGGTCTGAGTGATGCTGTACCGGTTTCCAAGATGGACAGAACGAATGATTTTTTGCAAAGTAATGTCAAAAAGGATCTGGAAGATCCTATGTCTCCAAATTCACATAGTTTAGTGGTTGTTCCACAGCATCAGCTTACAGCTGATGATATAAGGTCTTTTCATGATGCTAATGACCTTACAAAAGGAGAAGAAAATGTTGAAATTCCATGGGTGAACGAAACTACTAATGATTTTGCACCATCTTTTAACTACATACCCCAAAACCTTGTGTTCCAAGAGGCTTATGTTAACATTTCTCTATCACGTGTTGGCAGTGAGGACTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTCTTCATCCTGTGCTTGTGCAAATAAAACTGGGGGTGAATTTGCATACAATGCTCAAGGCCTACTGAAGGAAGAATTCTTGGAAGAGTGTATTGCCATCAGTCGCAATCCTCAGCAACATTTATTCTATTGCAAAAATTGCCCTCTTGAAAGATCTAAAAGTGATGGTTGTTTAGAACCGTGTAAGGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAGCAGTGTGGCAATCGGGTTATCCAGCGAGGAATAACTTGCCATTTGCAGGTATTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGCACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGCGAGTTTGTTGGAGAAATTTTATCCATGAAAGAGTTGCATGAGAGGAACTTGAAATGCACTGAAAATGGGAAATATACATGCCCAGTTTTACTGGATGCTAATTGGGATTCAGGATATGTGAAGGACGAAGAAGCTCTATGCTTAGATGCAGCTTCCTTTGGCAACACTGCCAGGTTTATCAATCACAGATGTTCTGATGCAAACTTGATTGAAATCCCAGTCGAAGTTGAGGATCCTGGTCATTATTACTATCATTTTGCCTTTTTCACTTCCAGAAAAATATCAGCACAGGAAGAGCTAACATGGGACTATGGCATTGACTTTGATGACCACGATCATCCTGTCAAGCtgttccagtgcagatgtggcagtaaattctgcaggaacatgaagagatatagcaGATCTCTTAGATATGCGTCAATTGCAGGATGA 2469 0.4099 MAPTPSQKERALAACRAMSSLGIDDSKVKSVLKKLLKVYDKNWELIEAENYRVLADAIFEDDDNMVPELKKKSQTADVHNTGHSMSSSFQNNQEAETGCEEAQMHVETPQPLKRLRLQGQESQPLHPPPNGSPSPSSKKLKLDDNASGKKPQNKPVSSDGNPGIATRPLPPRDGIVDKGKQPASLPLNHRGRRLPSERVPQSIPSREPTVEPGRFLLPNNQMPRTQTLVIPKDEPIDELTDYEMPIAVIPPESSVRNSSIKNGVAGKHSGHVTVTSSQNRDGVGDEDVIPTSKKEATCNVEIASSTLGEVKLSLSYGSALQGSDFHIPSRDQLIKVMEDKCLRSYKITDPNFSVKNLLRDICDCMLEFRNDSNDDSQEGSVISSSVDVSKEPRAPGTLSVVGNKDLDTSSHFSNGSINVKSSDDLVSPGSILPLAHPNGLSDAVPVSKMDRTNDFLQSNVKKDLEDPMSPNSHSLVVVPQHQLTADDIRSFHDANDLTKGEENVEIPWVNETTNDFAPSFNYIPQNLVFQEAYVNISLSRVGSEDCCSTCMGNCVLSSSCACANKTGGEFAYNAQGLLKEEFLEECIAISRNPQQHLFYCKNCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITCHLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSMKELHERNLKCTENGKYTCPVLLDANWDSGYVKDEEALCLDAASFGNTARFINHRCSDANLIEIPVEVEDPGHYYYHFAFFTSRKISAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRYSRSLRYASIAG 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01073 822 Pfam SET domain 662 783 IPR001214 GO:0005515
Gma13g01073 822 ProSiteProfiles Pre-SET domain profile. 546 647 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma13g01073 822 ProSiteProfiles SET domain profile. 650 783 IPR001214 GO:0005515
Gma13g01073 822 MobiDBLite consensus disorder prediction 78 98 - -
Gma13g01073 822 Gene3D - 2 64 IPR043017 -
Gma13g01073 822 MobiDBLite consensus disorder prediction 263 282 - -
Gma13g01073 822 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 2 310 - -
Gma13g01073 822 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 378 819 - -
Gma13g01073 822 MobiDBLite consensus disorder prediction 373 402 - -
Gma13g01073 822 MobiDBLite consensus disorder prediction 263 289 - -
Gma13g01073 822 Gene3D SET domain 480 793 IPR046341 -
Gma13g01073 822 SMART preset_2 494 634 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma13g01073 822 SUPERFAMILY SET domain 489 791 IPR046341 -
Gma13g01073 822 SMART set_7 650 789 IPR001214 GO:0005515
Gma13g01073 822 MobiDBLite consensus disorder prediction 71 103 - -
Gma13g01073 822 MobiDBLite consensus disorder prediction 120 219 - -
Gma13g01073 822 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 378 819 - -
Gma13g01073 822 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 2 310 - -
Gma13g01073 822 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 822 IPR025776 -
Gma13g01073 822 Pfam Ubiquitin-binding WIYLD domain 6 64 IPR018848 GO:0018024
Gma13g01073 822 Pfam Pre-SET motif 498 642 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma13g01073 822 CDD SET_SETDB-like 518 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01073 Gma-Chr13 24886508 24891815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01073 626 808 C2H2 Transcription Factor Family AT2G23740 38.743 1.87e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma13g01073 Pre-SET 7.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01073 - - gmx:100778335 1638.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00376 10 3573689 3579532 Gma13g01073 13 24886508 24891815 GST
Gma19g02332 19 51949338 51953259 Gma13g01073 13 24886508 24891815 PCT
Gma03g02296 03 48184397 48190811 Gma13g01073 13 24886508 24891815 PCT
Gma13g01073 13 24886508 24891815 Gma19g01589 19 45272266 45279277 PCT
Gma13g01073 13 24886508 24891815 Gma03g01534 03 41595357 41602416 PCT