Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01069 ATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAACATGGGGATGTCTGGAGCACTTTCTTCATCCTTGTCAATCCTTCCAATACCCCCAGAAGAGATGTTTCCCAAGCTGCCTCAATCACAATTGGATTTTGTAGAACAAGAGCTTATGACAAGACCTTTTACTCATTCAAGTTATTTAAATTCCGGTGGAGTAGTTGGGCATATTTTTTCGTCTTCCCCTGGATATTCAACTGATCTTCATCACTCATCTCTTTCACCTGATGAAAAACACTCTACTAATGCTCATTTGATTTCACAATCATCAACTAACATCACCCAATTTCCATTATCATATTCTTCAAATACTGGACCACCAACTTCAGCAACACCAAGCCATTATTCCAAAGAAAGCAGTGTTTCCTGGCATACAGATTCCCTGCCAAGCTTTCTGGATTTTCCTGAAAATGGCTCTATTGATAATAATCGGGTAGAAAGTAGTGCCTGCCCTATAATGGCATCTGAGGAGTATTCTAAGCAAAATGATTGGCAGGAGTGGGCTGAGAGGCTAATCAGTGATGATGACACTTTGACTACTAATTGGAATGACCTTCTTGCTGACAACATTCAAGATCTTGAGCCAAAGGTGCCATTCCAAGTTTCAAAACCACTTTCACAGATTCCAGGACATCAATCCCAAGGTCATCAACAACTTCCTGCTTCATATGGAGAGAATTGCATTGGTGCTGCCCTCTCTTCCTCAGCAAATTTTGCTCCTGCTAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGGAGTGAAAAAGCTACTCCAAAGGGCGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTATGGAGAAAAAAACAAGTTCCGTTGAAGAGATGGCATCTCTAGATTTGAGAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGTAAACCTGGAAATGAAACGTTCAAGGCACCATCATCTATCATTGAGACTCCATCTGGGGGGTCTTCAAATGCTACGAAAGATTCCCTTGCCAAAAATGAAATGGAAGCATCACAAGTGAACCATGGCAGGTCAGGACCTGATCAGGTTAAGGGCAGTACGACATTTGAGGAAGGCTCATTGGAAAAGTGCGGGAAGCCTGATTCTCCCAAAACTGAACATGCTATTGCTAGTGAAGATAGTGCTCAAGCCCCGAAGCGTCAAAGAACTGAGTAA 1440 0.4229 MEAHPTFSIERSKQLNNMGMSGALSSSLSILPIPPEEMFPKLPQSQLDFVEQELMTRPFTHSSYLNSGGVVGHIFSSSPGYSTDLHHSSLSPDEKHSTNAHLISQSSTNITQFPLSYSSNTGPPTSATPSHYSKESSVSWHTDSLPSFLDFPENGSIDNNRVESSACPIMASEEYSKQNDWQEWAERLISDDDTLTTNWNDLLADNIQDLEPKVPFQVSKPLSQIPGHQSQGHQQLPASYGENCIGAALSSSANFAPAKSRMRWTPELHEAFVEAVNQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVMEKKTSSVEEMASLDLRTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGNETFKAPSSIIETPSGGSSNATKDSLAKNEMEASQVNHGRSGPDQVKGSTTFEEGSLEKCGKPDSPKTEHAIASEDSAQAPKRQRTE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01069 479 Coils Coil 347 367 - -
Gma13g01069 479 MobiDBLite consensus disorder prediction 392 479 - -
Gma13g01069 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 316 IPR017930 -
Gma13g01069 479 Pfam MYB-CC type transfactor, LHEQLE motif 344 390 IPR025756 -
Gma13g01069 479 Pfam Myb-like DNA-binding domain 261 312 IPR001005 -
Gma13g01069 479 Gene3D - 258 317 - -
Gma13g01069 479 MobiDBLite consensus disorder prediction 449 463 - -
Gma13g01069 479 SUPERFAMILY Homeodomain-like 257 313 IPR009057 -
Gma13g01069 479 MobiDBLite consensus disorder prediction 394 444 - -
Gma13g01069 479 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 23 477 IPR044848 GO:0003700
Gma13g01069 479 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 23 477 - -
Gma13g01069 479 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 259 313 IPR006447 GO:0003677
Gma13g01069 479 MobiDBLite consensus disorder prediction 113 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01069 Gma-Chr13 24858690 24863146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01069 53 388 G2-like Transcription Factor Family AT4G28610 53.043 5.07e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma13g01069 Myb_DNA-binding 9.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01069 - - gmx:100793593 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00372 10 3548067 3554404 Gma13g01069 13 24858690 24863146 GST
Gma19g01585 19 45250634 45255910 Gma13g01069 13 24858690 24863146 PCT
Gma03g01530 03 41572547 41576808 Gma13g01069 13 24858690 24863146 PCT
Gma19g02334 19 51960755 51964855 Gma13g01069 13 24858690 24863146 PCT
Gma03g02298 03 48194985 48199201 Gma13g01069 13 24858690 24863146 PCT
Gma13g01069 13 24858690 24863146 Gma19g01585 19 45250634 45255910 PCT
Gma13g01069 13 24858690 24863146 Gma03g01530 03 41572547 41576808 PCT