Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01064 ATGAAGTGCCTACGCTCTGTGGAGTCGTTGGGAGGAGCCGATGAAGTGTTTCCTTCATCATCTGGATCTCTTGCAAGTGCAATCAAGGACTTTTCAGCTAGTGAAAATTCTTGCCTGGCTGAACAGTTAGATAAGAAGCCAGACACCGGCAACATAGAAGAAGCTGAATCATCCTTACGCGAGAGTGGCGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAGCAGAGAACGCCGCAAGAGACATTCTCAAAACCATGCTGAACCGCAAATGTCTATACATTCTGTTGGCTTACTATTGGAAGCTGTCTTCCTGAAAGCAAAATCTTTGCAGGTTCTTGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAAGTTATTCTGGATATAGTGGAGTCTTCATTGCCTGAAGGCATGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCCTCAATAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCTATTTTGTCTTATCGACGAGCACTCCTTCATCATTGGAATCTCGATGCGGAGACTATAGCAAAGATTCAGAAAGAATTTGCTGTTTTTCTTCTATATAGTGGAGGAGAAGCAACACCCCCTAATCTCCGTTCTCAAATGGATGGCTCATTTGTACCTAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTATTAAGAAAGGTCTCTCTAAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTTCCTGGGACCATCCATCGAAGTGAAAGGTACTATGCTCTAGCTCTTTGTTATTATGGAACAAGTAAGGACTTGGTAGCACTGGATCTTCTCAGAAAGTTGTTGAGGAGTAGAGAGGATCAACACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTCTACTCTTGCAGAAGAAGGAGTAAGCTTTGCGTGGCAAGTGCTTCAGAACCTGGATGGTAGATGTAATCAGCTAGAAAATCATGCCAATTTCTTTCTTGGTGTTTCACTTTCAGCACACTCGAAATTGGCCGTTTCTGATTCTGATAGGTTTAAGAGACAATCTGAGGCACTTCAAGCCCTAGAAACTGCTGGAAGAACGGGAAACCCCTTTGTACTATACCATCTCAGTTTAGAATATGCAGAACAAAGGAAGCTGGATGCTGCACTTTATTATGCAAAATGCTTTCTAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTATTGTTAGCCCGGATATTGTCTGCTCTAAAACAGTTTTTGGATGCTGAATCTATTATCAATACTGCTTTGGATCAAACTGGAAAATGGGATCAAGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAATGCAATTGAGACATATACGCAGTTGCTTGCTGTTCTTCAAATCCAGAGTAAAGGTTTTGGTTCTGGGAAGAAGCTATACAAGGAAAACAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTGCTTATGTTTATATCAGTCTTTTACAGTGGCATGATGCAGAGGTGTGCCTTTCAAAATCCAAAGCCATCAAACCACTCTCTGCTTCTAGATGTCATGCAATAGGCATAATGTACGAAGCAAAGGGCCATTACAAAGAGGCTCTAAAAGCTTTTGGTGATGCCTTGGACGTTGATCCTGGCCATGTCCCTAGCTTAATCTCCACTGCTGTAGTTCTTAAACGATGTAGTAATAAATCAAATCCAGCAGTTAAAAGCTTTCTGGTGGATGCGCTACGGCATGACAGATTCAATGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGCATCATCATTAGTTGAAGCTGCAGAATGTTTTCAAGCAGCACACTTTCTTGAAGAATCTGCACCTGTTGAACCTTTCAGATGA 2139 0.4133 MKCLRSVESLGGADEVFPSSSGSLASAIKDFSASENSCLAEQLDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKRHSQNHAEPQMSIHSVGLLLEAVFLKAKSLQVLERFKEAAQSCKVILDIVESSLPEGMPDNFGAECKLQETLNKAVELLPELWKLADCPREAILSYRRALLHHWNLDAETIAKIQKEFAVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPGTIHRSERYYALALCYYGTSKDLVALDLLRKLLRSREDQHHVPGLLMASKICCENSTLAEEGVSFAWQVLQNLDGRCNQLENHANFFLGVSLSAHSKLAVSDSDRFKRQSEALQALETAGRTGNPFVLYHLSLEYAEQRKLDAALYYAKCFLKLEGGSNVKGWLLLARILSALKQFLDAESIINTALDQTGKWDQGDLLRTKAKLQIAQGQLRNAIETYTQLLAVLQIQSKGFGSGKKLYKENRDRARNLEVEIWHDIAYVYISLLQWHDAEVCLSKSKAIKPLSASRCHAIGIMYEAKGHYKEALKAFGDALDVDPGHVPSLISTAVVLKRCSNKSNPAVKSFLVDALRHDRFNASAWYNLGLLHKAEGTASSLVEAAECFQAAHFLEESAPVEPFR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01064 712 Gene3D Tetratricopeptide repeat domain 412 540 IPR011990 GO:0005515
Gma13g01064 712 PANTHER PROTEIN NPGR2 1 712 - -
Gma13g01064 712 PANTHER PROTEIN NPG1 1 712 IPR043376 -
Gma13g01064 712 SUPERFAMILY TPR-like 321 539 IPR011990 GO:0005515
Gma13g01064 712 Pfam Tetratricopeptide repeat 601 632 IPR019734 GO:0005515
Gma13g01064 712 SUPERFAMILY TPR-like 511 684 IPR011990 GO:0005515
Gma13g01064 712 SMART tpr_5 600 633 IPR019734 GO:0005515
Gma13g01064 712 SMART tpr_5 510 543 IPR019734 GO:0005515
Gma13g01064 712 SMART tpr_5 135 168 IPR019734 GO:0005515
Gma13g01064 712 SMART tpr_5 670 706 IPR019734 GO:0005515
Gma13g01064 712 SMART tpr_5 474 507 IPR019734 GO:0005515
Gma13g01064 712 SMART tpr_5 320 353 IPR019734 GO:0005515
Gma13g01064 712 SMART tpr_5 439 472 IPR019734 GO:0005515
Gma13g01064 712 SMART tpr_5 566 599 IPR019734 GO:0005515
Gma13g01064 712 Gene3D Tetratricopeptide repeat domain 541 707 IPR011990 GO:0005515
Gma13g01064 712 Gene3D Tetratricopeptide repeat domain 21 355 IPR011990 GO:0005515
Gma13g01064 712 ProSiteProfiles TPR repeat profile. 600 633 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01064 Gma-Chr13 24804044 24808909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01064 1 712 Calmodulin-binding Proteins AT4G28600 58.840 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01064 K21843 - gmx:100792009 1373.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00366 10 3514119 3519863 Gma13g01064 13 24804044 24808909 GST
Gma19g01576 19 45169959 45175296 Gma13g01064 13 24804044 24808909 PCT
Gma03g01523 03 41470344 41475816 Gma13g01064 13 24804044 24808909 PCT