Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01057 ATGATGAATGTGGGATTTGAGGTGATTCATGCAAATTATAATCCAAACATGATTCATCCACACATGCATGAAACATGGGATCACTACTCAAATACCATTACTTCCTTGCCATTTTCAGCTCCAACCCCATCAAACCCTTATCCAAAGCCAGCAACAGAAAACAACCATTGCCTTAACTTGGGGCAGAATGAACTCTGTGATTGGATGGAAGAACACATTAGTGACATCACCAAACACTTTGTTGAAGACTTACCAGAAACAACCACTTCTGATAACTTGCTTTCTAATAACCCAACAGGGGTTGTTTCCCATCACAACCTTGGTGTTCCCTCACTACTTTCACCCAACTTCACCCAAAGAAAACCCTCATGTTTTAGACCCCAGTTTGAGTCCTTCACCAACGATCCCCCAAACTTCAATCTTCACATTCAAACAAACACCTCAACTTTAGATCAAAACAAACACAATGTTTATGATCAAGGGTTGAACCTAATAACCCTTTTAATGGAGTGTGCAGTGGCAATCTCAGTTGACAACCTAGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAATGGCCTCACCATACAAAGCATCATGTGCTGAACGTGTTGTTGCTTACTTTGCAAAAGCCATGACTAGCAGGGTGATGAATTCATGGCTTGGAGTGTGTTCCCCTTTGGTTGATCACAAAAGCATAAACTCAGCATTCCAAGTGTTCAACAACATTTCCCCTTTCATCAAATTTGCTCACTTCACTTCCAACCAAGCAATTCTAGAAGCAGTGAGTCATTGTGACAGCATTCACATCATTGACTTGGACATCATGCAAGGGCTTCAATGGCCGGCTTTTTTCCACATCTTAGCCACAAGAATGGAGGGTAAACCAAAAGTCACAATGACAGGTTTGGGAGCCTCAATGGAACTCCTTGTTGAAACAGGAAAACAACTCACAAACTTTGCAAGAAGGCTTGGCTTGTCACTGAAGTTTCACCCCATTGCAACAAAGTTTGGGGAAGTAATTGATGTGTCCATGCTTCATGTGAAGCCTGGTGAGGCAGTGGCAGTGCACTGGCTGCAGCATTCACTGTATGATGCAACTGGACCAGATTGGAAAACACTGAGACTCCTTGAGGAGTTGGAGCCAAGAATCATCACCTTGGTGGAGCAAGATGTAAACCATGGAGGGTCTTTCTTGGACCGTTTTGTTGCCTCCTTGCACTACTACTCCACCCTCTTTGATTCCCTTGGAGCATACTTACACAATGATGATTCAAACCGGCACCGTGTGGAGCATGGCCTTCTCTCCAGGGAGATCAACAATGTGTTGGCCATAGGAGGACCTAAGAGGAGTGGTGAAGACAATTTTAGGCAGTGGAGAAGTGAGCTTGCTAGGCACTGTTTTGTGAAGCAGGTTCCATTGAGTGACAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCTGCTTATGGGTATAGCCTTGCGCAAGTTGAGGGAACTTTAAGGCTTGGATGGAAGGATACAAGCTTGTACACAGCTTCTGCATGGACCTGCTGTAATTCTAGCTAG 1581 0.4383 MMNVGFEVIHANYNPNMIHPHMHETWDHYSNTITSLPFSAPTPSNPYPKPATENNHCLNLGQNELCDWMEEHISDITKHFVEDLPETTTSDNLLSNNPTGVVSHHNLGVPSLLSPNFTQRKPSCFRPQFESFTNDPPNFNLHIQTNTSTLDQNKHNVYDQGLNLITLLMECAVAISVDNLGEAHRMLLELTQMASPYKASCAERVVAYFAKAMTSRVMNSWLGVCSPLVDHKSINSAFQVFNNISPFIKFAHFTSNQAILEAVSHCDSIHIIDLDIMQGLQWPAFFHILATRMEGKPKVTMTGLGASMELLVETGKQLTNFARRLGLSLKFHPIATKFGEVIDVSMLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVASLHYYSTLFDSLGAYLHNDDSNRHRVEHGLLSREINNVLAIGGPKRSGEDNFRQWRSELARHCFVKQVPLSDNSMAQAQLILNMFSPAYGYSLAQVEGTLRLGWKDTSLYTASAWTCCNSS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01057 526 Pfam GRAS domain family 164 521 IPR005202 -
Gma13g01057 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 522 IPR005202 -
Gma13g01057 526 ProSiteProfiles GRAS family profile. 155 521 IPR005202 -
Gma13g01057 526 PANTHER OS05G0485400 PROTEIN 26 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01057 Gma-Chr13 24738225 24739906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01057 127 521 GRAS Transcription Factor Family AT3G54220 53.676 3.90e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma13g01057 GRAS 6.3e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01057 - - gmx:100775656 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00359 10 3450177 3452057 Gma13g01057 13 24738225 24739906 GST