Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01056 ATGGATTCTGCAAGGAGTTGGCTTCAGAAGTTCCAGCCTCGAGATAAAACCAGGGCTGCTGGGAAGAAAAAGGAGGAGGATGGTAATGGAGGAAACCAGGATTCGAATGAACCCGTGGATGAAGCATTGTTATCCAGTGTCACGAAGCAGAAGGTGGCAGCAACAAAGCAGTACATTGAAAATCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAGGATCAAAACAACCTGCTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTGACAATGATTGGGAAAGGTGCATTTGGGGAGGTCAGAGTCTGTAGGGAGAAAACTAGTGATCATGTATATGCAATGAAGAAGCTGAAAAAATCAGAGATGCTTCGTAGAGGCCAGGTTGAGCATGTTAAAGCTGAAAGGAATCTCCTCGCAGAGGTTGACAGAAATTGCATAGTCAAGCTTTATTGTTCTTTCCAAGATGATGAATATTTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTAGGAGAAACAATTTTGGCTATTGAATCTATACATAAGCACAATTATATACATAGGGATATCAAGCCAGACAACTTACTACTTGATAGATATGGACACTTGAAATTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGTGCACTTGAAGAAAAGGATTTTTCTGTGGGTCAGAATGTGAATGGATCTACACAAAGCTCAACTCCTAAACGCTCACAACAGGAACAACTGCAACATTGGCAAATGAACAGGAGGACACTTGCTTATTCCACAGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTGGGAGCTATTATGTACGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCCCAGAAGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAATCAAAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAAATCAATCATCATCAAGATCTGGTCCATGGAGGAAGATGCTTTCATCTAAGGACTTGAATTTTGTTGGATACACTTACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATAGCTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATCAAGTCACTTTTCGAAACATCAGAGGGGTCTGATACTGATACTTCTGCAAATGATCAACCTGCTCAAGGAAGCTTTTTGAAGCTCTTGCCACCCCAGTTAGAGGTATCTCCTCATCGCAACAAGAATCTTCCTCCCAGGTCCTAA 1668 0.3993 MDSARSWLQKFQPRDKTRAAGKKKEEDGNGGNQDSNEPVDEALLSSVTKQKVAATKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTSDHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDRNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETILAIESIHKHNYIHRDIKPDNLLLDRYGHLKLSDFGLCKPLDCSALEEKDFSVGQNVNGSTQSSTPKRSQQEQLQHWQMNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKTYLKFPEEARLSPEAKDLISKLLCNVNQRLGSKGADEIKAHPFFKGVEWDKLYQMEAAFIPEVNDELDTQNFEKFDESDSQNQSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGIAELKKKQSKPKRPTIKSLFETSEGSDTDTSANDQPAQGSFLKLLPPQLEVSPHRNKNLPPRS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01056 555 MobiDBLite consensus disorder prediction 9 31 - -
Gma13g01056 555 Gene3D Transferase(Phosphotransferase) domain 1 205 434 - -
Gma13g01056 555 MobiDBLite consensus disorder prediction 507 530 - -
Gma13g01056 555 MobiDBLite consensus disorder prediction 1 40 - -
Gma13g01056 555 ProSiteProfiles Protein kinase domain profile. 121 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01056 555 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gma13g01056 555 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 553 - -
Gma13g01056 555 Gene3D Phosphorylase Kinase; domain 1 119 445 - -
Gma13g01056 555 SMART serkin_6 121 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01056 555 MobiDBLite consensus disorder prediction 496 555 - -
Gma13g01056 555 SUPERFAMILY Protein kinase-like (PK-like) 94 469 IPR011009 -
Gma13g01056 555 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 553 - -
Gma13g01056 555 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gma13g01056 555 CDD STKc_NDR_like 119 480 - -
Gma13g01056 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Gma13g01056 555 Coils Coil 63 83 - -
Gma13g01056 555 Pfam Protein kinase domain 122 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g01056 555 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gma13g01056 555 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01056 Gma-Chr13 24727315 24734363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01056 1 549 AGC Kinase Gene Family AT3G23310 75.135 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gma13g01056 Pkinase 1.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01056 K08790 - gmx:100820558 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00358 10 3437585 3445144 Gma13g01056 13 24727315 24734363 GST
Gma13g01056 13 24727315 24734363 Gma19g01570 19 45103685 45110809 PCT
Gma13g01056 13 24727315 24734363 Gma03g01514 03 41405837 41409859 PCT