Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01051 ATGGGTCTTAGAGACATTGGTGCTTCACTGCCCCCAGGGTTTCGGTTTTACCCGAGTGATGAGGAGTTGGTCCTTCATTACCTTTACAAAAAGATCACTAATGAGGAAGTTCTGAAGGGTACCTTGATGGAAATTGATTTACACACGTGCGAGCCATGGCAACTCCCTGAGGTGGCTAAGCTTAATGCAAACGAATGGTACTTCTTCAGCTTCCGTGACCGTAAATATGCAACTGGATTTCGGACCAATCGTGCGACGACATCTGGCTATTGGAAAGCAACGGGGAAGGATCGTACGGTGCTTGACCCTGCCACGCGTGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTACAGGAACAGGGCTCCAAATGGTATCAAAACGGGTTGGATCATGCATGAGTTTCGCTTGGAGACGCCACATACGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGCAAAGCAGACAACAGTGCCAAACTCATCATGTACGAGAGCACAGTTCCATCCCTAACTTTGGCTTCGTCATCTCCAACCAACCAAAACACCACACCATCAATTGGGTATAACCAATTACTTGCCCCATTCTCTTCCTCAATGGCAACCCATCATCATCATCATCATCATATTCCAAACCAAAGCCAAAACAACAACTCCTTGATGAGTCTCCTTCAGTTCTCTAGGGAAACAAACACCAACAACTCTAGCACCGTTACTCAAATTAGTCCCAAATGTGATGATAATGGATATGGGTTCTTATGGGACATGGACCTCGAAGAAAATAGCTTCCATGATGGCGGGGCATCAAACTTGGATGGAATGAGATTCGAGGTTGATAATAATAATAGTGTGgtgttgttatga 876 0.4532 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPATREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHTPPKEDWVLCRVFHKGKADNSAKLIMYESTVPSLTLASSSPTNQNTTPSIGYNQLLAPFSSSMATHHHHHHHIPNQSQNNNSLMSLLQFSRETNTNNSSTVTQISPKCDDNGYGFLWDMDLEENSFHDGGASNLDGMRFEVDNNNSVVLL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01051 291 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Gma13g01051 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 285 - -
Gma13g01051 291 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 285 - -
Gma13g01051 291 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Gma13g01051 291 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Gma13g01051 291 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01051 Gma-Chr13 24648932 24653702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01051 6 249 NAC Transcription Factor Family AT1G56010 44.094 2.71e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma13g01051 NAM 7.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01051 - - gmx:100783645 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00353 10 3372470 3383059 Gma13g01051 13 24648932 24653702 GST
Gma19g01567 19 45035334 45050444 Gma13g01051 13 24648932 24653702 PCT
Gma03g01511 03 41343173 41359858 Gma13g01051 13 24648932 24653702 PCT
Gma13g01051 13 24648932 24653702 Gma19g01567 19 45035334 45050444 PCT
Gma13g01051 13 24648932 24653702 Gma03g01511 03 41343173 41359858 PCT