Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01036 ATGCCGTCGCTACTCTCCCCGGGCAAAATCCACTGCCTCGAGGTGGAGAATTTCAAGTCCTACAAGGGCTTCCAAGTGATCGGTCCCTTCTACGACTTCACCGCCATCCTTGGCCCCAACGGCGCCGGCAAGTCCAACCTCATGGACGCCATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAGCTCCGTGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAGGAGCAGAAAGGCCGCAGAGCTTTCGTCCGCCTCGTCTACCACCTCGCCAACTCCACCGAGATCAAGTTCACTCGCACCATCACCAGCGCCGGCGCCAGCGAGTACCGCATCGACGAATCCCTTGTCAATTGGGACACCTACAACAACAGACTTAAGTCCCTCGGCATTCTCGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAGTCTATTGCGTCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAACAGATATCCGGCTCTGACGAGTGCAAGAGGGACTATGAGCAGTTTGAGGAGGAAAAAGGTGCTGCTGAGGAAAAATCAGCACTTGTTTATCAGAAAAAGAAGACTGTGGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCTGTCTGCAACAAGAACTGAAATCTATGAAGGGAGAACATTTCTTGTGGAAGTTGTTTAATATACACAACGATTATGCTGAAACAATTAAGGATCTTGAAGATGAGGAAAAAAGTCGTGAAGGTGTTGTTAAAGAACTAGAATACTTCGAAAGTGAAGCTAGTAAAAAGAAAAAAGAACAGGCCAAATATCTGAAAGAGATTGCACTACGTGAAAAGAGAATTGCTGAGAAAAGCAACAAGCTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCACTTCAAAAATTAAAAAAGGGAAGAAAGAGCTTGATAAAAAAAAGGTTGAACGAACGAAGCATGATGCTGATATAGCATTACTACAGAATGACATCCAGGATCTTACAGCCAAAATGGCAGACCTTCAGGAAAAGGGACGAGATGTTGATGACGAGCTTGATTTGCAAGGCAATGACTTGGAAGAATATTTTCGCATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAGGAGCTTCTAGATAGGAAACTAAATGCTGATAGTGAAGCTCAAAAGAACTTAGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCACAGGAAGAACAGATGCGAGCAAGGCTTGAAAAAATTCTTGATAATTCTGCAAAAAATAAAGTTGGCCTTGAAAACTTGAAAAAAGAACTACGCGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTAGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGAGAATGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAGACTCTGAAACGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAAAAGAAGTATAACCTAGCTGTTACCGTTGCTATGGGTAAATTTATGGATGCAGTCGTAGTTGATAATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAGCAAAACTGATTTTTGACTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGCGGTGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTCTGTTGACAAAATCCGGCACAATGACTGGGGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAATTGGAAGAGCTAGGATCAATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACCATCAAAGAAAGAATTGAATGCATCAGTCCAGAACTGCAGAAGTTAAATGATGCTGTTAACAAGAGCAATGCAGATGTACGTAAGCTTGAGAGGAGGATAAATGAAATTACTGATAGGATATACAGGGACTTCAGCAAGTCAGTTGGGGTTGCAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGCTGCTCAAAGTATAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGATATGACTTCACGAATTCAAGAATTGGAAGCTTCTCTTGGCACTTTAGAGAAAGATTTAAAACGTGTACAGGACAGAGAGGCTGCAGCAAAGTTAGCAGCTGAGAATGCTACAGAAGAGATTAATCAGCTTAAGGAGGAAGCTAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAAGAGTGGAAAAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAGGAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAGATATTAGAAAAGTGTGAACTAGAACAGATTAGCCTCCCAGTCATACTGGATCCTATGGATACTGATATCTCAGTTCCAGGTCCATCTTTTGATTTTCATCAACTAAATAGGGCACTGAAAGATAGGAGACACTCAGATAGGGATAAAATTGAGGTAGAGTTTAAGCAAAAAATGGATGCCTTGATATCTGAAATTGAAAGAACTGCACCAAATTTGAAGGCATTAGACCAATATGAAGCTCTGCTAGAAAAAGAGAGAGTTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGGTACCACTTGTTCATGGATGCTTTCACCCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACGCATCCACTGGGTGGAACAGCATACCTAAACTTGGAAAATGATGATGATCCCTTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGTTATAAGCCTTCACCATTCTTTATATTGGACGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCAAGGACTAGTCAGGATGCTGATGGTGGAAATGGTTTTCAGAGTATAGTGATATCACTGAAAGACACCTTTTATGACAAAGCCGAAGCATTAGTTGGGGTTTACAGAGACTCTGAAAGAGGCTGTTCGAGAACTCTCACATTTGATTTGACTAAATACCGAGAGTTCTAA 3651 0.4196 MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAILGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIKFTRTITSAGASEYRIDESLVNWDTYNNRLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLCLQQELKSMKGEHFLWKLFNIHNDYAETIKDLEDEEKSREGVVKELEYFESEASKKKKEQAKYLKEIALREKRIAEKSNKLDKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERTKHDADIALLQNDIQDLTAKMADLQEKGRDVDDELDLQGNDLEEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQQLRNRESELNSQEEQMRARLEKILDNSAKNKVGLENLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDNEKTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLGGTAKLIFDCKFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSQEKKTIKERIECISPELQKLNDAVNKSNADVRKLERRINEITDRIYRDFSKSVGVANIREYEENRLKAAQSIAEERLNLSSQLSKLKYQLEYEQNRDMTSRIQELEASLGTLEKDLKRVQDREAAAKLAAENATEEINQLKEEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLIHSKEAQIDQLNVQKQEILEKCELEQISLPVILDPMDTDISVPGPSFDFHQLNRALKDRRHSDRDKIEVEFKQKMDALISEIERTAPNLKALDQYEALLEKERVVTEEFEAVRKEEREKTQRFNEVKQRRYHLFMDAFTHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTSQDADGGNGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTKYREF 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01036 1216 Gene3D - 578 659 - -
Gma13g01036 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1215 - -
Gma13g01036 1216 Coils Coil 170 190 - -
Gma13g01036 1216 Coils Coil 828 932 - -
Gma13g01036 1216 Coils Coil 791 811 - -
Gma13g01036 1216 Coils Coil 335 369 - -
Gma13g01036 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 1199 IPR027417 -
Gma13g01036 1216 Coils Coil 750 777 - -
Gma13g01036 1216 CDD ABC_SMC1_euk 1095 1210 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Gma13g01036 1216 PIRSF SMC 8 1212 IPR024704 GO:0005524|GO:0016887
Gma13g01036 1216 Coils Coil 674 694 - -
Gma13g01036 1216 Pfam RecF/RecN/SMC N terminal domain 10 1197 IPR003395 -
Gma13g01036 1216 Coils Coil 198 218 - -
Gma13g01036 1216 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Gma13g01036 1216 SUPERFAMILY Smc hinge domain 481 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma13g01036 1216 Coils Coil 307 327 - -
Gma13g01036 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1215 - -
Gma13g01036 1216 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma13g01036 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1157 IPR027417 -
Gma13g01036 1216 Gene3D - 956 1215 IPR027417 -
Gma13g01036 1216 Gene3D - 8 219 IPR027417 -
Gma13g01036 1216 Coils Coil 454 502 - -
Gma13g01036 1216 Gene3D - 497 577 - -
Gma13g01036 1216 Coils Coil 398 446 - -
Gma13g01036 1216 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma13g01036 1216 Coils Coil 708 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01036 Gma-Chr13 24517045 24528513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01036 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 3.22e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01036 K06636 - gmx:100785315 2266.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00349 10 3298855 3311438 Gma13g01036 13 24517045 24528513 GST