Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01030 ATGGATTTTGATTCATCTTTCTTCCAATACCAAAACTTTAACTCTTCCTTTGTAAATTCCTCTGTTTGTGCAGAACCATTTTCTTGGGAGAACTTTCTTTTCTTCAATGAAGAAAACACCACCACCACCACCCTTAATTCCTTCACCATCACTGACCACTCCTCACAATCACGAATCAAGGAATCATCATCCTCAGATTATTCCAACTCTTCGGGCTCCTTGGTCAGCACTGAGTCACAACTAGAAGTCTCATCCAATTTAACTCATGCAAGCCATCAACTCGAAACACATGCATCACCACAACCACCAAAAGAAGGTAACAAAGACAAGAGACCCTTCAGAGGAGTGAGGAGAAGGCCATGGGGAAAATTTGCTGCTGAAATAAGAGACTCCACAAGAAATGGGGTCAGAGTTTGGATTGGCACATTTGACACAGCTGAAGCAGCAGCACTGGCTTATGACCAAGCTGCTTTGTCCACAAGAGGGTCCATGGCAGTGCTGAATTTCCCAGAAGAAGTGGTGAGGGAATCACTCAAAGACATGCAGAACAATAATAAGCCATCATTGGAAGATGGTTCCTCTCCAGTGTTGGCACTCAAGAGAAAACACACCATGAGGAGAAAATCCAAAGCCACTAACAAAAAAACCAAAAGGGGTCATGGAATGGAGTTAGAAAATATTGTGCTTTCACAAAATGTGCTGGTCTTGGAGGACTTGGGTTCTGAGTACTTGGAGCAACTTCTCAGCTTGACTTCTTCTGATGATGATTTCCTTTGCTAG 780 0.4308 MDFDSSFFQYQNFNSSFVNSSVCAEPFSWENFLFFNEENTTTTTLNSFTITDHSSQSRIKESSSSDYSNSSGSLVSTESQLEVSSNLTHASHQLETHASPQPPKEGNKDKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMQNNNKPSLEDGSSPVLALKRKHTMRRKSKATNKKTKRGHGMELENIVLSQNVLVLEDLGSEYLEQLLSLTSSDDDFLC 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01030 259 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Gma13g01030 259 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 252 - -
Gma13g01030 259 PANTHER DNA-BINDING DOMAIN 4 252 IPR044808 GO:0003700|GO:0009873
Gma13g01030 259 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Gma13g01030 259 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Gma13g01030 259 MobiDBLite consensus disorder prediction 85 116 - -
Gma13g01030 259 MobiDBLite consensus disorder prediction 85 100 - -
Gma13g01030 259 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Gma13g01030 259 Gene3D AP2/ERF domain 112 172 IPR036955 GO:0003700|GO:0006355
Gma13g01030 259 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Gma13g01030 259 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Gma13g01030 259 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01030 Gma-Chr13 24466262 24467298 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01030 108 248 AP2-EREBP Transcription Factor Family AT3G23240 62.411 1.18e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g01030 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01030 K14516 - gmx:100784784 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00343 10 3245677 3246823 Gma13g01030 13 24466262 24467298 GST
Gma19g01550 19 44885044 44886127 Gma13g01030 13 24466262 24467298 PCT
Gma03g01496 03 41202352 41203352 Gma13g01030 13 24466262 24467298 PCT
Gma13g01030 13 24466262 24467298 Gma19g01550 19 44885044 44886127 PCT
Gma13g01030 13 24466262 24467298 Gma03g01496 03 41202352 41203352 PCT