Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01029 ATGGAGGGTGGAAGATCATCTGCTTCAAATGGGAATTGTGAGGTTCGGTATAGAGGGATTAGAAGAAGGCCATGGGGCAAGTTTGCAGCAGAGATTCGTGACCCTACGAGAAAAGGGACAAGGATATGGCTTGGAACATTTGACACTGCGGAACAAGCTGCTCGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCAATTCTCAACTTCCCAAATGAGTACCAATCTcataatccaaactcttctttgcctatgcctctaattgtgcctcctccttctTATTCTTCTTCTTTCACTTCTAATTATTCTGGTGATGATAATAACCACCTTACACTTCTACAAGTGAAATATAACACAAGCCAACCAGCTAGCTGA 384 0.3698 MEGGRSSASNGNCEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQSHNPNSSLPMPLIVPPPSYSSSFTSNYSGDDNNHLTLLQVKYNTSQPAS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01029 127 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Gma13g01029 127 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gma13g01029 127 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Gma13g01029 127 PANTHER DNA-BINDING DOMAIN 12 104 IPR044808 GO:0003700|GO:0009873
Gma13g01029 127 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Gma13g01029 127 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Gma13g01029 127 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Gma13g01029 127 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Gma13g01029 127 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109-LIKE 12 104 - -
Gma13g01029 127 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01029 Gma-Chr13 24453129 24453703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01029 12 89 AP2-EREBP Transcription Factor Family AT3G23230 67.949 9.15e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g01029 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01029 - - gmx:100500462 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00342 10 3235842 3236318 Gma13g01029 13 24453129 24453703 GST
Gma19g01549 19 44873051 44873685 Gma13g01029 13 24453129 24453703 PCT
Gma03g01495 03 41190069 41190846 Gma13g01029 13 24453129 24453703 PCT
Gma13g01029 13 24453129 24453703 Gma19g01549 19 44873051 44873685 PCT
Gma13g01029 13 24453129 24453703 Gma03g01495 03 41190069 41190846 PCT