Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01028 ATGACTTCCCCTTTCTTTGACCCCATCCACGATTCTCTTTCCTTCGACATGGTTGATAATTTCTCCATGGCACCAACAGAAGGAAACCATGGCAAGGCAAAGCAATTGGTGGTGAAATCTGAAGCGCAGAATAATAAGGAAAGGTCTTACATTGGTGTGAGGAAAAGGCCTTGGGGGAAATTCGCAGCAGAGATCAGAGATACAACGAGGAACGGCGCAAGGGTTTGGCTTGGAACCTTTGACAGTATTGAGGCTGCTGCATTAGCTTATGATCAAGCTGCATTTACCATGAGAGGTGATCATGCTGTGCTCAATTTTCCGGTGAAGACGGTGAAAAAGTCTTTGCAAGAGATTCAATATAGCTGCTGCAATGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAGTTGTCATCAAAAGCTAAAATGTGTAGAGGGAAAGAGACATCATCATCAGAGGATTCAACACAAAGTGTGGTGGTGTTTGAGGACTTGGGAGTTGACTATCTTGAGCATCTTCTTAGCGTATCAGATCAAAGTGAAAGTACAAGCCCTAGCTACTTCAACTAA 585 0.4427 MTSPFFDPIHDSLSFDMVDNFSMAPTEGNHGKAKQLVVKSEAQNNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDSIEAAALAYDQAAFTMRGDHAVLNFPVKTVKKSLQEIQYSCCNGSSPALALKERHCIQRKLSSKAKMCRGKETSSSEDSTQSVVVFEDLGVDYLEHLLSVSDQSESTSPSYFN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01028 194 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Gma13g01028 194 PRINTS Ethylene responsive element binding protein signature 89 109 IPR001471 GO:0003700|GO:0006355
Gma13g01028 194 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
Gma13g01028 194 ProSiteProfiles AP2/ERF domain profile. 49 107 IPR001471 GO:0003700|GO:0006355
Gma13g01028 194 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Gma13g01028 194 Gene3D AP2/ERF domain 49 109 IPR036955 GO:0003700|GO:0006355
Gma13g01028 194 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 13 181 - -
Gma13g01028 194 PANTHER DNA-BINDING DOMAIN 13 181 IPR044808 GO:0003700|GO:0009873
Gma13g01028 194 SMART rav1_2 49 113 IPR001471 GO:0003700|GO:0006355
Gma13g01028 194 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01028 Gma-Chr13 24430862 24431446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01028 33 185 AP2-EREBP Transcription Factor Family AT3G23240 53.548 1.03e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g01028 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01028 K14516 - gmx:100812569 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00341 10 3202569 3203231 Gma13g01028 13 24430862 24431446 GST
Gma19g01548 19 44850314 44850952 Gma13g01028 13 24430862 24431446 PCT
Gma13g01028 13 24430862 24431446 Gma19g01548 19 44850314 44850952 PCT