Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01026 ATGACTCCCCCTTTCTTCCAGAACCCAGCTTCAGATTGGAACATGTTGCAGCAGGAGCCTTCAGAAATTTTGTTCGATTCAATGTCAAGCAATAATGCTGTTCTTGACCCTATCCAAGATTCTCTTTCCTTTGATATGGTTGACTTCTCCACAACACCAACAGAAGGAAACCATAACGAGGCAAAGAAATTGGTGGTGAAATCTGAACTGCAGAATAATAAGGAAAGGTCTTACATTGGTGTGAGGAAAAGGCCTTGGGGAAAATTCGCAGCAGAGATCAGAGACACAACGAGGAACGGTGCGAGGGTTTGGCTTGGAACCTTTGACAGTGCTGAGGCTGCTGCATTAGCTTATGACCAAGCTGCATTTACCATGAGAGGTGATAATGCTGTGCTCAATTTTCCGGTGAAGACGGTGAAAGAGTCTTTGCAAGAGATTCAATATAGCTGCAGCAATGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGTATCCAAAGAAAGTTGTCATTAAAGGGTAGAAAGTGTAAAGCGAAAGAGACATCATCATCAGAGGATCCAACACCAAGTGTGTTGGTGTTCGAGGACTTGGGAGCTGACTATCTTGAGCAACTTCTAAGCATATCTGATCAAAGTGCAAGACCTAGCTACTTCAGCTAA 663 0.4419 MTPPFFQNPASDWNMLQQEPSEILFDSMSSNNAVLDPIQDSLSFDMVDFSTTPTEGNHNEAKKLVVKSELQNNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFDSAEAAALAYDQAAFTMRGDNAVLNFPVKTVKESLQEIQYSCSNGSSPALALKERHCIQRKLSLKGRKCKAKETSSSEDPTPSVLVFEDLGADYLEQLLSISDQSARPSYFS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01026 220 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Gma13g01026 220 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Gma13g01026 220 PANTHER DNA-BINDING DOMAIN 44 209 IPR044808 GO:0003700|GO:0009873
Gma13g01026 220 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Gma13g01026 220 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Gma13g01026 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 44 209 - -
Gma13g01026 220 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Gma13g01026 220 Gene3D AP2/ERF domain 77 137 IPR036955 GO:0003700|GO:0006355
Gma13g01026 220 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Gma13g01026 220 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01026 Gma-Chr13 24384439 24385101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01026 44 214 AP2-EREBP Transcription Factor Family AT3G23240 50.292 3.38e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g01026 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01026 K14516 - gmx:100811486 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02349 19 52092396 52093024 Gma13g01026 13 24384439 24385101 PCT
Gma13g01026 13 24384439 24385101 Gma03g01494 03 41172349 41173335 PCT