Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01025 ATGGTGACAGAGACACACACAAATAGAGTCACGAGAGACCAGAATCGCGAGAAAGGTGGAGGGCTCACGATGACGGAGAAGTACACAGTCGCTCTTGAGTACGATAATACTCATGACAGATATTTTTGGCAGAATCCAGATTGGAACATGTTGCAGGAGCCTTCAGAAATTTTGTTCGATTCATTCTCAAGCAATCCTGTTCGAGACACCGTCCACGATTTACTTTCCTTCGACATGGTTGACTTCTCCACGCCACCAACAGAAGGAAATCACAACAAGACAAAGCAATTGGTGGTGAAGTCTGAAGTGCAGAATAAGGAAAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGACACAACGAGGAATGGCACTAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGAGGCTGCTGCATTGGCTTATGATCAAGCTGCATTTTCCATGAGAGGCCACGATGCTGTGCTCAATTTTCCGGTCAAAAGGGTCAAAGAGTCTTTGCTAGAGATTCAATATGGTTGCAGCAAAGGGTGTTCACCAGCTCTTGCTATCAAGGAGAGGCACTACATCAGACGAAAATTGTCATCAAAAGCTAGAAAGTGTAGAGAGAATAAACAGGAATCAGAGGCACCAACACCAAGTGTGGTTGTGTTAGAGGACTTGGGAGTTGAATATCTAGAGCAACTTCTAAGCATATCGGATCAAAGTGTAAGCTTATAA 744 0.4462 MVTETHTNRVTRDQNREKGGGLTMTEKYTVALEYDNTHDRYFWQNPDWNMLQEPSEILFDSFSSNPVRDTVHDLLSFDMVDFSTPPTEGNHNKTKQLVVKSEVQNKERSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFESAEAAALAYDQAAFSMRGHDAVLNFPVKRVKESLLEIQYGCSKGCSPALAIKERHYIRRKLSSKARKCRENKQESEAPTPSVVVLEDLGVEYLEQLLSISDQSVSL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01025 247 CDD AP2 110 168 IPR001471 GO:0003700|GO:0006355
Gma13g01025 247 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700|GO:0006355
Gma13g01025 247 PANTHER DNA-BINDING DOMAIN 88 240 IPR044808 GO:0003700|GO:0009873
Gma13g01025 247 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700|GO:0006355
Gma13g01025 247 SMART rav1_2 109 173 IPR001471 GO:0003700|GO:0006355
Gma13g01025 247 MobiDBLite consensus disorder prediction 1 22 - -
Gma13g01025 247 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
Gma13g01025 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 88 240 - -
Gma13g01025 247 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Gma13g01025 247 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Gma13g01025 247 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01025 Gma-Chr13 24369677 24372351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01025 72 244 AP2-EREBP Transcription Factor Family AT3G23240 52.874 2.79e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g01025 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01025 K14516 - gmx:100527364 403.675