Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01024 ATGGAAGAGGAGTCAAAGGAGAAAAAGAAGGACACTAAGGAGGAACCACGTTATAGAGGAGTGCGGCGGCGGCCGTGGGGGAAGTTCGCGGCCGAGATTCGGGACCCGGCCCGGCACGGTGCCCGAGTGTGGCTGGGGACATTTCTCACGGCGGAGGAGGCTGCTAGGGCTTATGACCGAGCTGCCTATGAGATGAGGGGCGCTTTAGCCGTTCTCAATTTTCCAAATGAGTATCCTTCATGCTCTTCTATGAACTCATCTTCAACATTAGCACCTTCATCTTCTTCTTCAAATTCAATGCTTAAAAGTGATCATGGTAAACAAGTTATTGAGTTCGAGTGCTTGGATGACAAATTGTTAGAGGACCTTCTTGATTGTGATGACTATGCCTACGAGAAAGACTTGCCTAAGAACTGA 417 0.4916 MEEESKEKKKDTKEEPRYRGVRRRPWGKFAAEIRDPARHGARVWLGTFLTAEEAARAYDRAAYEMRGALAVLNFPNEYPSCSSMNSSSTLAPSSSSSNSMLKSDHGKQVIEFECLDDKLLEDLLDCDDYAYEKDLPKN 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01024 138 PANTHER ETHYLENE RESPONSE FACTOR 1 128 - -
Gma13g01024 138 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Gma13g01024 138 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Gma13g01024 138 MobiDBLite consensus disorder prediction 80 102 - -
Gma13g01024 138 PANTHER DNA-BINDING DOMAIN 1 128 IPR044808 GO:0003700|GO:0009873
Gma13g01024 138 MobiDBLite consensus disorder prediction 1 21 - -
Gma13g01024 138 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Gma13g01024 138 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Gma13g01024 138 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gma13g01024 138 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Gma13g01024 138 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Gma13g01024 138 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01024 Gma-Chr13 24361605 24362279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01024 14 128 AP2-EREBP Transcription Factor Family AT3G23230 58.537 2.38e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g01024 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01024 - - gmx:100810414 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00340 10 3195193 3195772 Gma13g01024 13 24361605 24362279 GST
Gma13g01024 13 24361605 24362279 Gma19g01547 19 44837261 44837870 PCT
Gma13g01024 13 24361605 24362279 Gma03g01493 03 41168542 41168980 PCT