Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01023 ATGGCACTGAACAAGAACCACTCCTACAACAACAAGCTTGGTAATGAAGCTCTCCCACCCATCAAAACCCAGGCTGGAACACTCCAACACCCACCACAACCTGCTTCATCAGACTATGCTTTTCCCATATTTGTCATTGTTGTGCTCAGCATCTTGGCCACTGTTCTGTTGCTCCTCAGCTACTTCACTTTTCTAACCAAATACTGCTCAAACTGGCGCCAAGTTAACCCAATGAGATGGATTTCCATCCTTCGAGCTCGGCACGAAGAGGACCCCTTCATAGCATTCTCTCCTGCCATGTGGAACCGAGGGCTTGATGAGTCTATCATCAGAGAAATCCCAACTTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGACCAAAGTGTATATGGTTGTGTGGTTTGTTTGACTGAGTTCAAGGAACAGGATGTGCTAAAAGTTCTTCCCAATTGCAACCATGCTTTTCATTTGGACTGCATTGACATTTGGCTTCAGACCAATTCCAATTGCCCACTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGACCACATCATAGCACCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAACATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTTGGGGGAGAATCTGGAGCAGTGATACCACCGGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAACCACACTACAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGGAAGAAAGATGACCAGTTTCTGATTCAGCCTATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATTATACAACAAAATAGACTTCAGAATGAGGCTAGTGCTAGTGAGGATTGTAATAGCAGATGTCGAAGAGCATTCTTCCCGTTTTGCTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTTTGGAGAATGATGTTTAA 1014 0.4389 MALNKNHSYNNKLGNEALPPIKTQAGTLQHPPQPASSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISILRARHEEDPFIAFSPAMWNRGLDESIIREIPTFQFIKGEEGEDQSVYGCVVCLTEFKEQDVLKVLPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGESGAVIPPVQQERNDSRGSLAHRNHTTRKCHHVSIMGDECIDIRKKDDQFLIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRLQNEASASEDCNSRCRRAFFPFCYGKGSKNAVLPLENDV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01023 337 SUPERFAMILY RING/U-box 109 179 - -
Gma13g01023 337 CDD RING-H2_PA-TM-RING 132 174 - -
Gma13g01023 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
Gma13g01023 337 PANTHER RING-H2 FINGER PROTEIN ATL16 5 334 IPR044600 GO:0016567|GO:0016740
Gma13g01023 337 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Gma13g01023 337 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 334 - -
Gma13g01023 337 SMART ring_2 132 173 IPR001841 -
Gma13g01023 337 Pfam Ring finger domain 132 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01023 Gma-Chr13 24351793 24352806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01023 32 300 C3H Transcription Factor Family AT1G04360 43.974 2.04e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01023 K19041 - gmx:100809883 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00338 10 3181834 3182850 Gma13g01023 13 24351793 24352806 GST
Gma13g01023 13 24351793 24352806 Gma19g01546 19 44830986 44832136 PCT
Gma13g01023 13 24351793 24352806 Gma03g01492 03 41163981 41165015 PCT