Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01020 ATGAACAAATCCTCAGATGCAGCAGCGTCTCCATATTGCAGAGGCAGGTCCAAGAAACCCAATCTCCGAAGCTCCAAATCCCAACCCCCAAGCCACGTTGAGTTCAGCTCCAAGACGCCGGAGAAGCCGCCGCAGCGAATCCGCAACCGCGGCGTAGCGCTCTCCGTCGCCGACATCAGAAAGGCCGCCTGCAAGCGCTTGCAAGATCAGAAGCAATGCACTGAAACGACGTCGTCATCGTTGTCGTCGTCGTCGTCGCTCAGCAAAAGTGTCAGGAGGCAGATCTCACTGGGGCCTTCTTCTCCCAGTAAACCCATGGCTACTGAAGATGAATCCTCTAATCTTCCCGAAAAATATGAAATTTTGGATGAGTTCTTCAATCGCTTGGATACTTTGGTTTCACTGCACCGTCTGAAACGGTGGACTCCAACCTTTACTTCAATCAGTTCACGGATTGAATCTTTAACTGACAGGAGGTTTACTCACAGTCATCTAGCCCAGTTGAAATTTATCTTGCGTAAGGCTATTGTTCTTAGGAAGCATCTAGTGCTTGATGAACGGACGAGTTGTATGAAGCCGGATATTCACATTTCTTTAGACCCAGATGCGGTGGAGGCTGACGCTGCCAAGTTGCCCCCACAAGGTGGAAGAGTGTCGCTGAAGAAGGTGTTTCGGGCACGGTTAAAAGAATTTTGGGAATCTCATCCTGAGGGTGATGAAATTCCAGAAGGGACATTGCCTGAGCCATTCAATCGCCAAAAGAAAGACAGTGTTGTGGACATGTTGGAAACTCCCCTACCAACAAAATTGCCACCCTGCATGCGCTATAGTGACATTGTCAATAATGCAGACTTAGATGAAAAATTGTATGTACCTGTCAATGCAACAGTTGAATTCCCTAATGAGCATCTGGCAGCACCTTCTCACATGGCTCCATCCTTTAGAGCAGATGATGTACAGCAAAATCCTCTGTTAGATTCATTGCAGCCCCTGGCTTTTCCAGTTTCAGAGTCAAGCCAGAAGGAAAATCCACCCTTGGTGGATACTGAATCTCACCTGAAAACTTCCCCAGCTAAGTTTTCTTCAGAAGCATCTAGTAGTGAAAGTTGTCTAACAATTTGTGCTTCTCTGGAATCATCCAGTCCTCACCCTGCTACTCCAAGCAAAACCATTGAGTACACAGAAAAAAAAGATGGGTCTCTCAAGAGCATTGATGCCATGTCAACACCAACAAGCAGAACAAACAAGTATACAGAAAACAAAGATGGGTCTCTCGAGAGCATTGATGCCACTTCAACTCCAGCTAAACTGGTTTCTACCCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGGTCACCCAAAAGACGTTATATGAGCCCAGATGACCACTCTATCAGTTCTTTGAACAAGTTGGCTCGGCATCCATCTCGCTCAAGGTCATTGAAATTCGACACTCCAGTGAAGAATAAAGATGATATTTCTGACACCCTCCAAGAAGAATTTATCCAATCGATTAGAGAAAAGGAAAGACTGGCAATGGAGGAAAGAGACCCAGCTATCACACAAGCAAAGAAAAGAAAGAAGAATATAGCTAGCATCCCTAAGCTCTTTGACATGATTCGTGGGTTGCTTCGACAGCGGAATTGTATCACTAAAGCAGAGCTTGTAAGCAAGATAATCTCAACCCGGTGTGATATTGCTGACAGAAGTGAAGTTGAAGAGCAGCTAAATTTGTTGCAAGAACTAGCACCAGAATGGATTTATGAGAAGCATGTCTATAGTGGGGATTTGCTATTATTCATAAATAAAATGTTGAGCCCTGAAACCGTTCGAGCATCTCTTGAAGAAGCAACATAG 1860 0.4543 MNKSSDAAASPYCRGRSKKPNLRSSKSQPPSHVEFSSKTPEKPPQRIRNRGVALSVADIRKAACKRLQDQKQCTETTSSSLSSSSSLSKSVRRQISLGPSSPSKPMATEDESSNLPEKYEILDEFFNRLDTLVSLHRLKRWTPTFTSISSRIESLTDRRFTHSHLAQLKFILRKAIVLRKHLVLDERTSCMKPDIHISLDPDAVEADAAKLPPQGGRVSLKKVFRARLKEFWESHPEGDEIPEGTLPEPFNRQKKDSVVDMLETPLPTKLPPCMRYSDIVNNADLDEKLYVPVNATVEFPNEHLAAPSHMAPSFRADDVQQNPLLDSLQPLAFPVSESSQKENPPLVDTESHLKTSPAKFSSEASSSESCLTICASLESSSPHPATPSKTIEYTEKKDGSLKSIDAMSTPTSRTNKYTENKDGSLESIDATSTPAKLVSTPIRLMSATPALRSPKRRYMSPDDHSISSLNKLARHPSRSRSLKFDTPVKNKDDISDTLQEEFIQSIREKERLAMEERDPAITQAKKRKKNIASIPKLFDMIRGLLRQRNCITKAELVSKIISTRCDIADRSEVEEQLNLLQELAPEWIYEKHVYSGDLLLFINKMLSPETVRASLEEAT 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01020 619 MobiDBLite consensus disorder prediction 403 427 - -
Gma13g01020 619 CDD Cdt1_c 502 616 IPR032054 -
Gma13g01020 619 MobiDBLite consensus disorder prediction 69 110 - -
Gma13g01020 619 CDD Cdt1_m 99 269 IPR014939 -
Gma13g01020 619 MobiDBLite consensus disorder prediction 454 488 - -
Gma13g01020 619 Pfam DNA replication factor Cdt1 C-terminal domain 503 592 IPR032054 -
Gma13g01020 619 Pfam DNA replication factor CDT1 like 115 208 IPR014939 -
Gma13g01020 619 SUPERFAMILY "Winged helix" DNA-binding domain 112 250 IPR036390 -
Gma13g01020 619 MobiDBLite consensus disorder prediction 335 361 - -
Gma13g01020 619 MobiDBLite consensus disorder prediction 1 53 - -
Gma13g01020 619 SMART CDT1_2 115 248 IPR014939 -
Gma13g01020 619 MobiDBLite consensus disorder prediction 67 114 - -
Gma13g01020 619 Gene3D - 490 619 IPR038090 -
Gma13g01020 619 MobiDBLite consensus disorder prediction 404 418 - -
Gma13g01020 619 PANTHER DNA REPLICATION FACTOR CDT1 24 619 IPR045173 GO:0003677|GO:0030174|GO:0071163
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01020 Gma-Chr13 24329789 24332941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01020 77 619 Core DNA Replication Machinery Family AT3G54710 32.079 9.37e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01020 K10727 - gmx:100808801 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00335 10 3159927 3163151 Gma13g01020 13 24329789 24332941 GST