Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01013 ATGACTGGTTCAGGATCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTGAGAGGTTGTGTTTTTGCACCTTATTTTTGCCATGAGCAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTTCTTGCTCACCTTCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCCAGACTTCAGGATCCAATTTATGGCTGTGTCTCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGCTTATCTCAAGGAACAAGCTGCTCAGAGTTGTCTCGATGGCTCTATCAATGAAAACCCTAGTGAAAAATTATTTGAAAAATCTTCTTCTGCTTTACCTCAAGATCTTCAAAGTTGGTTTAATCAGGTGGGAAATTCCAACCTGGGGCCAGAATTTCTTCCTAACATGTGTACTAATTTATCAACACAACATTATGGGAACAATGCCCTCATGGAAGATCTAAACCCTATTGGAATTAATTATGAAACTTCAGGAGCCATGGAAGGAAACAACTCCTCTAGCTTCGATGATAGTTCTAATAACTACTCCATGTCCTATGACATGCAAACAAACAGGAGGACATGGGGTTTTCATGAAGTGGAGGATCTACATTCAGTGGCTTTTGGATACGGAACTCGATCACATTCATGA 714 0.4146 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLDGSINENPSEKLFEKSSSALPQDLQSWFNQVGNSNLGPEFLPNMCTNLSTQHYGNNALMEDLNPIGINYETSGAMEGNNSSSFDDSSNNYSMSYDMQTNRRTWGFHEVEDLHSVAFGYGTRSHS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01013 237 Coils Coil 87 107 - -
Gma13g01013 237 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Gma13g01013 237 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Gma13g01013 237 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 234 - -
Gma13g01013 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01013 Gma-Chr13 24256108 24257454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01013 7 231 AS2 family AT3G58190 51.101 9.73e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma13g01013 LOB 5.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01013 K13945 - gmx:100805623 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00329 10 3097732 3098857 Gma13g01013 13 24256108 24257454 GST
Gma19g01540 19 44759704 44760789 Gma13g01013 13 24256108 24257454 PCT
Gma03g01487 03 41107244 41107999 Gma13g01013 13 24256108 24257454 PCT
Gma13g01013 13 24256108 24257454 Gma19g01540 19 44759704 44760789 PCT
Gma13g01013 13 24256108 24257454 Gma03g01487 03 41107244 41107999 PCT