Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01012 ATGACTTCTGCAACTGGTAATGACACTGGCTCTGCAGGTTCTTCTTCTGGCTTTGGATCTCCCTGTGGGGCATGCAAGTTCCTAAGAAGAAAGTGTGCCGCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGAGCTGCTAGATTCGCTGCCATTCATAAGGTGTTCGGTGCTAGCAACGTTTCCAAGCTGCTCCTGCGTATACCAGCTCACCAACGTTTTGAGGCAATGCTCACACTTGCTTATGAAGCACAAGCTCGCGTCAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTCACCTTGCAACAACAGGTAGCATGCTTGCAGGCACAAGTAATGCAAATGAAGGCACAACTAGACCAGAACCAGATGGAGTCCAGGAACTTGGAGAATCATGGGCCAGATAATGTTATTAGACAACCATTCAATCCATTTTGTTTCACTTCCATGAATAACCCCACATCTCCTCAGAGCTCACTTGATTCAATTGATTATAGCAGCATCAATGATGGAATGAGCATGCGAGATGTACAAAGAAGAGAGGATTTCTCACTGCAAGCTTGTAATTTTAAGAAAAGATCTTATAACAATGACTTGGATGAGTTGCAAGAATTGGCACTCAGGATGATGAGGAACTGTGACTAG 654 0.4419 MTSATGNDTGSAGSSSGFGSPCGACKFLRRKCAADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLRIPAHQRFEAMLTLAYEAQARVRDPVYGCVSHIFTLQQQVACLQAQVMQMKAQLDQNQMESRNLENHGPDNVIRQPFNPFCFTSMNNPTSPQSSLDSIDYSSINDGMSMRDVQRREDFSLQACNFKKRSYNNDLDELQELALRMMRNCD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01012 217 Coils Coil 188 215 - -
Gma13g01012 217 Coils Coil 101 135 - -
Gma13g01012 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 214 - -
Gma13g01012 217 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Gma13g01012 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 13 214 - -
Gma13g01012 217 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01012 Gma-Chr13 24249122 24251125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01012 13 215 AS2 family AT2G42430 51.464 2.76e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma13g01012 LOB 2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01012 K13944 - gmx:100776145 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00328 10 3088626 3091396 Gma13g01012 13 24249122 24251125 GST
Gma19g01539 19 44748422 44749691 Gma13g01012 13 24249122 24251125 PCT
Gma03g01486 03 41085938 41087950 Gma13g01012 13 24249122 24251125 PCT
Gma13g01012 13 24249122 24251125 Gma19g01539 19 44748422 44749691 PCT
Gma13g01012 13 24249122 24251125 Gma03g01486 03 41085938 41087950 PCT