Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01009 ATGGAATTCGGCTACCAAGAAGATTCCTCCAAAAGCTCGAGCGACGAAATCGATCGATCGTCCGAACAGAATGATGAGACGGGCATTGGCAGATCCTACGAGTGTGTGTTTTGCAAGAGAGGCTTCACCACTGCACAGGCTTTGGGGGGACACATGAACATACACAGAAAAGATAGAGCCAATAACAAGGCCAAACCCAATTTTCCTCCTTCGAGTTCAAGCAAGGTTGTTGATGAGAGTAATAACTACGCAAATCCAAGCTATCTTACAAGAGGGAATTACTATTCTTCTACTCTTCCTGATCATAGGGAGGTAGATGTTAATTACAGTTACTACCATCAATTGTATTTTCCCTCACACGCATGTGGTGCCAAATCACCTTCACATGTACAATATAGTAGTGAGGTTTTGTGTGTAGAGAACCAAAGGGATCCTCATCTTCTGTTTGGACAAGATTGGAGGCAAAGGGGTTTGAGTTTGTACACTAATCCACTATGTGTATATGAAAATAAAGACAAGATAGAAAACAACAGTGAAGAGGATGATCTGGATTTAGAGCTTAgacttggtcatcatccatag 582 0.4038 MEFGYQEDSSKSSSDEIDRSSEQNDETGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKAKPNFPPSSSSKVVDESNNYANPSYLTRGNYYSSTLPDHREVDVNYSYYHQLYFPSHACGAKSPSHVQYSSEVLCVENQRDPHLLFGQDWRQRGLSLYTNPLCVYENKDKIENNSEEDDLDLELRLGHHP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01009 193 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 5 193 - -
Gma13g01009 193 Pfam C2H2-type zinc finger 33 57 - -
Gma13g01009 193 SUPERFAMILY beta-beta-alpha zinc fingers 31 59 IPR036236 -
Gma13g01009 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Gma13g01009 193 MobiDBLite consensus disorder prediction 1 26 - -
Gma13g01009 193 MobiDBLite consensus disorder prediction 65 81 - -
Gma13g01009 193 PANTHER OS07G0101800 PROTEIN 5 193 - -
Gma13g01009 193 MobiDBLite consensus disorder prediction 9 25 - -
Gma13g01009 193 MobiDBLite consensus disorder prediction 53 81 - -
Gma13g01009 193 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Gma13g01009 193 Gene3D Classic Zinc Finger 7 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01009 Gma-Chr13 24220657 24221238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01009 31 193 C2H2 Transcription Factor Family AT4G17810 31.515 7.24e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g01009 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01009 - - gmx:102670484 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00325 10 3061191 3061674 Gma13g01009 13 24220657 24221238 GST
Gma19g01537 19 44722502 44723026 Gma13g01009 13 24220657 24221238 PCT
Gma03g01481 03 41052299 41052835 Gma13g01009 13 24220657 24221238 PCT
Gma13g01009 13 24220657 24221238 Gma19g01537 19 44722502 44723026 PCT
Gma13g01009 13 24220657 24221238 Gma03g01481 03 41052299 41052835 PCT