Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01008 ATGGAAGGAAACTATCTGAACAGAAACAGTACTACTCCACAGAGAGAGGATAGCTTTGGTTTTGAGGAGCATTCATGGGGAACTCCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCATCCTTATCTTCGTGGGTTTCCGAATGCCCTAAACCTAACCCTAATAATAACCCAACTCTTCTTCCACCACCCTCTTCTTCTTCACCATCTCCTTTGCCTGATGAGCCTTTGAACTATGCACATCCTTCTCCACTTTGTAGCCCTTGTCTCACTTTGTCTTCTTCACCCTCCCCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACCCCTTCTCATCAATTTCCTCTTTTGATTCCTCAAAGCGAAATTAAGATGATGAGTATGAATACAAGGAGTGATTTCATTGCTGATGAGGAAATGAAGGGCTGTGTGGTGGAGGAGGAGGAGCACAAGGGTTTTAAGAATAATGAGCAAAACATTACGTTGGAGTTAGGAATAGGAGTGCTTAAACACCAAGAGGAGAAGTTAGATTTGGAGCTTCGCCTCGGGCATTAA 636 0.4418 MEGNYLNRNSTTPQREDSFGFEEHSWGTPWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPNNNPTLLPPPSSSSPSPLPDEPLNYAHPSPLCSPCLTLSSSPSPASTSGDKKPRLTPSHQFPLLIPQSEIKMMSMNTRSDFIADEEMKGCVVEEEEHKGFKNNEQNITLELGIGVLKHQEEKLDLELRLGH 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01008 211 Pfam C2H2-type zinc finger 35 59 - -
Gma13g01008 211 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 17 211 - -
Gma13g01008 211 SMART c2h2final6 35 57 IPR013087 -
Gma13g01008 211 MobiDBLite consensus disorder prediction 1 16 - -
Gma13g01008 211 MobiDBLite consensus disorder prediction 1 23 - -
Gma13g01008 211 MobiDBLite consensus disorder prediction 71 104 - -
Gma13g01008 211 SUPERFAMILY beta-beta-alpha zinc fingers 32 61 IPR036236 -
Gma13g01008 211 PANTHER OS07G0101800 PROTEIN 17 211 - -
Gma13g01008 211 MobiDBLite consensus disorder prediction 81 104 - -
Gma13g01008 211 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Gma13g01008 211 Gene3D Classic Zinc Finger 22 77 - -
Gma13g01008 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Gma13g01008 211 MobiDBLite consensus disorder prediction 116 134 - -
Gma13g01008 211 MobiDBLite consensus disorder prediction 116 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01008 Gma-Chr13 24212035 24212670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01008 22 210 C2H2 Transcription Factor Family AT3G23130 39.267 2.49e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma13g01008 zf-C2H2_6 5.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01008 - - gmx:102662947 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00324 10 3051217 3051876 Gma13g01008 13 24212035 24212670 GST
Gma19g01536 19 44711098 44713069 Gma13g01008 13 24212035 24212670 PCT
Gma03g01480 03 41033470 41034586 Gma13g01008 13 24212035 24212670 PCT
Gma13g01008 13 24212035 24212670 Gma19g01536 19 44711098 44713069 PCT
Gma13g01008 13 24212035 24212670 Gma03g01480 03 41033470 41034586 PCT