Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01007 ATGCGGCTCGGAGAGGAGAGGGAAGAGTGCGAGTCCACAAGCATGGCGATTTTGCAGGGCCTTGCTTCGGACATTTCCTCTCTCACAACCTCCTCCATTCGCGCAACTCAAAGACGAACAAAACTCTTTCGTTCCCTTCATCTCTCATCATTTCCTCCTCTTCTCTTCCCATCGAGTCGAATATCAGTCGATGATTTCACTTTCACGCCGTTGGAAAATGCGCGCACCTGTTTCTCTTTGCATGGGATTCCAGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAACTAGTTTGGATTGATGGACAGGTTGTTTCCCGTTTGTCAAAATTATATCCCAAGGATATGGATGCGCCTACCGATGGGGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGGAAACCAGATACATGATGAATGAAATATATACTTATACTGGGAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACACCTGTATGATACTAATGTGATGCAAAGATACAAGGGAGCAACGATTGGAGACTTGGACCCACATGTTTTTGCTATTGCTGAATCAGCATATAGGGCAATGATTAATGAGGAAAAAAGCAACTCAATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTGGGTGGTAACACTGCATCTGAAGGAAGAACTGTTGAAAAACAAGTTCTAGAATCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCAAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTAATAAGTACGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCATTGTTTCTACCTTCTTTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAGATCATTTCACTACCTTAATCAATCCAATTGCTATGAATTAATTGGTGTAAATTCTGCTCAAGAGTATCTGAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCTATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCAGAAGAAACTGATTCATCAGTTCTAGAAGATGAAGAATCCAAGTTTCATCTCCAAACAACAGCAGAACTTCTCATGTGTGATCCTAATTCTTTGGAAGGTGCACTCCGTGAGCGTGTGATGATTACTCCAGAAGAGATCATCAAAAGAAGTCTTGATCCTCTTGGTGCTACAGTTAGCAGGGATGGTTTAGCCAAAACACTATATTCTCGATTATTTGACTGGTTAGTCCAAAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAATGAATAGTTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTGCAACAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACGAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAGGATGTACTGGATCTCATTGAAAAGAAACCAGGTGGAATCATTGCTCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCAACTCACGAAACATTTTCCCAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGACACGCTCAGATTTCACTGTTGTTCATTATGCAGGGGAGGTTCAGTATCAATCTGAGCAGTTTTTAGACAAGAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGCTTCCAAATGTTCATTTGTATCTGGCCTTTTCCCTCCAATTTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTCAAGCTACAATTACAACAGTTGATGGATGCACTCAGTCTGACAGAGCCACACTATATTAGATGTGTAAAGCCAAATAGTCTATTAAAACCTTGCATATTTGAAAATATGAACGTTATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCACTGGACCTTTCATGATTTCTTAACTCGATTAGGCATTCTTGCTCCGGAGGTTCTTCGGGGGAACTTCGAAGAAAAGGATTCATGTAAAAAGATTTTGGAGAAGATTGGGCTGGCAGGTTATCAGATAGGGAAAACACAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCAGAGAGCATTCCTGCTTAGTAGTTCTGCAACAGTTATCCAAAAGCATACTAAAACTCATTTTAGTCGGAAAAAATATATTGCATTGCAAAAGTCCTCTGTTTTTTTGCAATCCATTTGCAGAGGAGAACTGGCTCGAAGATCGTATTATCACATGAAGAGGGAAGCAGGTGCAGTCAGAATTCAAAAGTATATGCGTGGAACACTTGCCAGGAAATGGTACACCAAAATAAAGATCTCTGCCATTGTCTTGCAGACAGGTTTTCGAGCAGTGGCTGCTTGTAATAAATTTAGATATAGAAAGCAAATTAGTGCATCAACTACTATTCAGTCCTATTGGCGCCGACATAAAGCTCTCTATGACTATCAGAACCTTAGGAAAGCATCAATCAGTTCACAAAGCATCAATCACTCCAATGATAAACATGAACAGAAGGTTGTTTTGGGGACACCTGTGCTAAATGAAAGTCCTTCTATGgaagaatcttcaaatcctgtccaagaagaatcatcaagtcctttccaagaTGATGAAAACATTGAAGCTATCAGGGATTCCTCTAGTCCTCTCAAAGACACTGAAAAGATTGAGGTTCTTACTGTAGAAATAAAAAACTTGAAGGTCATGTTGCAGGAAGAAAAACAAAGAGGTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCCAGCGAAGAGTTACGCAAAAAGTTAGCAGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCGTTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTGAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGGGTTGACATTGCTTCCAGTAACTCTGATACTTCATCTACAGACTCTGATTTCACATTTCCAGCTCCTGTTTCGAATACCGAACCTTTGTCTTCCCCAGAGTCAAATTCTTTCCAACTAGTAGTTCAGGATGTCACTGCAGGGGATGGATCGGGATCTGAAAGTGGAAAGGAGGGTTCATTTGATGATTTCTTCTAG 3423 0.3941 MRLGEEREECESTSMAILQGLASDISSLTTSSIRATQRRTKLFRSLHLSSFPPLLFPSSRISVDDFTFTPLENARTCFSLHGIPENIVVGSHVWVGDPELVWIDGQVVSRLSKLYPKDMDAPTDGVDDMTKLAYLHEPGVLHNLETRYMMNEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGATIGDLDPHVFAIAESAYRAMINEEKSNSILVSGESGAGKTETTKMLMQYLAYLGGNTASEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFNKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELIGVNSAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEETDSSVLEDEESKFHLQTTAELLMCDPNSLEGALRERVMITPEEIIKRSLDPLGATVSRDGLAKTLYSRLFDWLVQKINISIGQDPSSKCLIGVLDIYGFESFQMNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLTRSDFTVVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSASKCSFVSGLFPPISEETAKSAKFSSIGSRFKLQLQQLMDALSLTEPHYIRCVKPNSLLKPCIFENMNVIQQLRSGGVLEAVRIKCAGFPTHWTFHDFLTRLGILAPEVLRGNFEEKDSCKKILEKIGLAGYQIGKTQIFLRAGQMAELDAQRAFLLSSSATVIQKHTKTHFSRKKYIALQKSSVFLQSICRGELARRSYYHMKREAGAVRIQKYMRGTLARKWYTKIKISAIVLQTGFRAVAACNKFRYRKQISASTTIQSYWRRHKALYDYQNLRKASISSQSINHSNDKHEQKVVLGTPVLNESPSMEESSNPVQEESSSPFQDDENIEAIRDSSSPLKDTEKIEVLTVEIKNLKVMLQEEKQRGDEYERKYVEAQGSSEELRKKLAETEKRVYQLQDSLNRMISSMSSQVAELKTILSTSSRLSSTFRPIARVDIASSNSDTSSTDSDFTFPAPVSNTEPLSSPESNSFQLVVQDVTAGDGSGSESGKEGSFDDFF 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01007 1140 Coils Coil 987 1042 - -
Gma13g01007 1140 ProSiteProfiles IQ motif profile. 845 869 IPR000048 GO:0005515
Gma13g01007 1140 MobiDBLite consensus disorder prediction 945 978 - -
Gma13g01007 1140 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 85 1078 - -
Gma13g01007 1140 PANTHER MYOSIN 85 1078 - -
Gma13g01007 1140 Pfam IQ calmodulin-binding motif 822 840 IPR000048 GO:0005515
Gma13g01007 1140 Pfam IQ calmodulin-binding motif 848 865 IPR000048 GO:0005515
Gma13g01007 1140 Pfam IQ calmodulin-binding motif 895 909 IPR000048 GO:0005515
Gma13g01007 1140 Pfam IQ calmodulin-binding motif 799 817 IPR000048 GO:0005515
Gma13g01007 1140 MobiDBLite consensus disorder prediction 1081 1125 - -
Gma13g01007 1140 SMART MYSc_2a 118 795 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma13g01007 1140 MobiDBLite consensus disorder prediction 1081 1140 - -
Gma13g01007 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 850 921 IPR027417 -
Gma13g01007 1140 SMART iq_5 844 866 IPR000048 GO:0005515
Gma13g01007 1140 SMART iq_5 819 841 IPR000048 GO:0005515
Gma13g01007 1140 SMART iq_5 892 914 IPR000048 GO:0005515
Gma13g01007 1140 SMART iq_5 796 818 IPR000048 GO:0005515
Gma13g01007 1140 SMART iq_5 867 889 IPR000048 GO:0005515
Gma13g01007 1140 Gene3D - 501 685 - -
Gma13g01007 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 847 IPR027417 -
Gma13g01007 1140 Pfam Myosin head (motor domain) 126 782 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma13g01007 1140 Gene3D - 797 846 - -
Gma13g01007 1140 Gene3D - 847 897 - -
Gma13g01007 1140 MobiDBLite consensus disorder prediction 946 968 - -
Gma13g01007 1140 PRINTS Myosin heavy chain signature 491 519 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma13g01007 1140 PRINTS Myosin heavy chain signature 544 572 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma13g01007 1140 PRINTS Myosin heavy chain signature 258 285 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma13g01007 1140 PRINTS Myosin heavy chain signature 211 236 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma13g01007 1140 PRINTS Myosin heavy chain signature 154 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma13g01007 1140 Gene3D Myosin VI head, motor domain, U50 subdomain 374 663 - -
Gma13g01007 1140 Gene3D - 728 795 - -
Gma13g01007 1140 CDD MYSc_Myo11 138 782 IPR036018 -
Gma13g01007 1140 SUPERFAMILY Tropomyosin 957 1057 - -
Gma13g01007 1140 ProSiteProfiles IQ motif profile. 820 849 IPR000048 GO:0005515
Gma13g01007 1140 Gene3D Kinesin motor domain 127 724 IPR036961 -
Gma13g01007 1140 ProSiteProfiles IQ motif profile. 893 922 IPR000048 GO:0005515
Gma13g01007 1140 Gene3D - 314 372 - -
Gma13g01007 1140 ProSiteProfiles Myosin motor domain profile. 124 794 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01007 Gma-Chr13 24181639 24203726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01007 82 1046 Myosins gene family AT1G54560 62.827 0.0 1368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01007 K10357 - gmx:100803485 2044.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00323 10 3023228 3045259 Gma13g01007 13 24181639 24203726 GST