Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01006 ATGATGGGTGAGAAGTTTTGTGTGAACGAGGAAGACAAGGGTGTGTTGGAGTCTGTGCTGGGTGCAGAGGCTGTTGCGTTCTTTATTTCCGCACTTTCCAATAATGTCTTTTCCGGTGTGGTTGCGCCATCGGCCAGTACTGACCCGGGTCTCCGACAGCGGTTGTGCCAGCTTGTTGAGGGTTCCAAGTGGAATTATGCTGTGTTTTGGCAGGTTGCTGTCTTGAAATCTGGTGGTTCTGCCTTGGTTTGGGGTGATGGGCATTGCAGTGATCCCAAAGGGGAGAGGAATGGAGTTGGGAAGGAGGATGAGCAGGAGGTGAGAAAGAATGTGCTGCAGAAGCTTGATGCCTGCTTTGGTGGGTCTGTGTCGAAAGAGGCTAATTATGCGAGATTGGACAGGGTTTCGGATTTGCTCATGTTTTACTTATCCTCAATGTGTTATATATTTGGTTTTGATTCGCCATGTGGCCCTGGCAGTTCGTTCAAGTCTGGTAAATTGATTTGGGCTTCCGATGCTGCTGGTTGTTTAAACCAATTAGAATCTAGATCGTTTATGGGGAAATTGGCTGGTCTTCAAACTGTTGTGTTTGTTCCTCTGAAGTCCGGGGTGGTGGAGCTTGGTTCGCTCGAAATGGTGCCTGAAGAGCACGGTGTTGTGGAGATGGTCAGGACAGCATTTGGGGAATCCAGTCCCGGACAGGCAAAGGTGTTTCCGAAGATTTTTGGGCATGAGTTAAGCCTAGGGGACACAAAATCTCAGTCTATAACTATTAGTTTCTCCCCGAAGGTGGAAGATGATCCTGGTTTTACTTCGGACTCCTATGAGGTTCAAGCACTAGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGGACTTTAGGTGTCAGTAATGAAGATGAGCGGAAGCCCAGAAAAAGAGGTAGAAAGCCGGCAAATGGGAGAGAGGAACCGCTGAATCATGTTGAAGCTGAGAGACAAAGACGTGAGAAGCTTAACCAAAGGTTTTATGCCTTGAGAGCTGTTGTCCCTAACATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTTATCACTGATCTCCAGATGAAGATCAAGGTGTTGGAAGCTGAGAAGAACATGATCCACAATCAGGACCAAAAATTGTCATTGCCAGATATGGATTTTCAGGAAAGAGAGGATGAGACAGTTGTGACAGTGAGATGCCCCTTAGATATTCACCCTGTTTCTAATGTTGTTAAAACGTTCAAGGAGCATCAAATTGTGGCTCAAGACTCCAGTGTTTCGACTACAGATGATAAAATTATTCACACATTCTCCATAAGAACTGAGGGAGGGGAGACTGCTGCTATACAGTTGAAAGAAAAGCTGGAAGCATCCCTATCCAAAAATCGATAG 1410 0.4596 MMGEKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSGVVAPSASTDPGLRQRLCQLVEGSKWNYAVFWQVAVLKSGGSALVWGDGHCSDPKGERNGVGKEDEQEVRKNVLQKLDACFGGSVSKEANYARLDRVSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKLIWASDAAGCLNQLESRSFMGKLAGLQTVVFVPLKSGVVELGSLEMVPEEHGVVEMVRTAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSYEVQALGVNHAYGNSSNGTLGVSNEDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMIHNQDQKLSLPDMDFQEREDETVVTVRCPLDIHPVSNVVKTFKEHQIVAQDSSVSTTDDKIIHTFSIRTEGGETAAIQLKEKLEASLSKNR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01006 469 MobiDBLite consensus disorder prediction 286 327 - -
Gma13g01006 469 SMART finulus 322 371 IPR011598 GO:0046983
Gma13g01006 469 PANTHER TRANSCRIPTION FACTOR BHLH3 298 467 - -
Gma13g01006 469 PANTHER MYC 2 298 IPR045084 GO:0003700|GO:0006355
Gma13g01006 469 PANTHER MYC 298 467 IPR045084 GO:0003700|GO:0006355
Gma13g01006 469 PANTHER TRANSCRIPTION FACTOR BHLH3 2 298 - -
Gma13g01006 469 MobiDBLite consensus disorder prediction 298 327 - -
Gma13g01006 469 Pfam Helix-loop-helix DNA-binding domain 320 366 IPR011598 GO:0046983
Gma13g01006 469 CDD ACT_UUR-ACR-like 400 467 - -
Gma13g01006 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Gma13g01006 469 CDD bHLH_AtAIB_like 313 390 - -
Gma13g01006 469 Coils Coil 362 382 - -
Gma13g01006 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 386 IPR036638 GO:0046983
Gma13g01006 469 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Gma13g01006 469 Gene3D - 308 383 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01006 Gma-Chr13 24157774 24159895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01006 2 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 51.271 6.81e-162 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g01006 bHLH-MYC_N 4.9e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01006 - - gmx:100782107 914.064