Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00988 ATGGAAGGGGATATCAGTGTGAATGGAGATCCTAACACTTACAGTAACAGCAATCAAGACTCAAAGAAGAGTGAGGCCAAAGATGAACCCGCCAAAACAGTACCCTTATACAGGCTTTTTTCATTTGCTGATCCTTTGGATCATTTGTTGATGTTTGTGGGAACTGTTGGTGCTATTGGGAATGGAATCTCCTTGCCCTTAATGACTCTGATATTTGGAAATATGATCAATGCATTTGGAGAATCCAGTAACACCAATGAGGTCGTCGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTTTTGCGTCATTTTTGCAGTTGACATGCTGGATGATCACTGGGGACAGACAAGCTGCAAGAATTAGAGGATTATACCTTCAAACAATTTTGAGGCAAGATGTCAGTTTCTTTGATAAAGAGACTAATACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACAGTTCTTATTCAAGATGCCATGGGTGAAAAGGTGGGACAGTTCATACAGTTAATATCAACTTTCTTTGGAGGTTTTGTTGTAGCATTCATCAAGGGATGGCTTTTAACTGTTGtcatgttagcttgtattccactccttgtcatgtctggtgctatgataactgtgattatttcaagagcatcatccgaaggacaagctgcttattctacagcagcaagtgtagtagagcagacaattggttctatccgaactgttgcatcatttactggggagaggctagctatagccaaatacaatcagtccttaaacaaggcatataagactggagtgcaagaggcactagcctctggtttgggATTTGGTTTGCTCTACTTTGTTTTTATCTGCAGTTATGGTCTGGCTGTATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACTGGAGGCAAGGTTTTGACTGTAATATTTGCTGTATTGACTGGCTCCATGTCTCTAGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCCTATGACACTACTGGTCGGAAGCTTGAAGACATTCGTGGTGATATAGAGCTTCGGGAGGTTTGCTTTAGTTATCCTACAAGACCTGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACCGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCCACGGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGTCTGGTGCAGTGCTTATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATTggcctagtcagccaggaaccagttctctttacttgtagcattaaagagaatattgcctatggcaaggatggtgcaactgatgaagaaatcagagctgcagcagaacttgctaatgctgccaaatttatagataaacttcctcagGGACTAGACACAATGGTTGGTGAGCATGGTACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTTTGGATGAAGCTACAAGTGCCCTTGACACTGAATCAGAGCGGATTGTACAAGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATAGTAGCCCACCGCTTGAGTACTATAAGGAATGCTGATACCATTGCTGTAATCCATCTAGGAAAAATAGTTGAAAGAGGTTCACATGTTGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTTATCAGACTACAAGAAATTAAAAGATTAGAAAAGAATGTAGATGTCAGAGAGCCTGAAAGTATAGTACATTCTGGAAGACATTCAAGTAAAAGGTCTTCTTTCTTACGATCTATAAGCCAAGAGTCACTGGGAGTAGGAAACAGTGGCCGCCATTCATTCTCAGCATCATTTGGTGTGCCCACATCTGTTGGCTTCATAGAACCTGCAGGTGAAGGGCCTCAAGATCCTCCTTCAACAGCTCCTTCACCACCAGAAGTGCCTCTTTATCGCCTGGCTTACCTAAACAAGCCAGAGATTCTAGTGTTACTGATGGGGACTGTATCTGCAGTGATAACCGGAGTAATATTACCTGTTTTTGGTCTATTGCTTTCCAAAATGATAAGTATTTTCTATGAGCCAGCTCATGAACTCCGTAAAGATTCAAAAGTCTGGGCAATAGTATTTGTTGGACTTGGGGCAGTATCATTCCTTGTTTATCCTGGTAGATTCTACTTTTTTGGTGTTGCTGGGGGTAAGTTGATCCAAAGGATTCGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGAATTCAAGTGGAGCAATTGGAGCTAGGCTTTCTACTGATGCAGCTTCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATACTGCCACAGCAATAGCTGGATTGGTAATTGCCTTTGAATCGAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGTGCCTCTTCTAGGACTAAATGGATATCTGCAATTCAAGTTCTTAAAAGGATTCAGTGCAGATACAAAGAAATTGTATGAGGAAGCAAGCCAAGTGGCAAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATTAAGACAGGCAAAAGGCAAGGGATAATAAGTGGAATTAGTTTTGGAGTATCATTCTTTGTGCTGTATTCAGTTTATGCAACCAGTTTTTATGCTGGAGCTCGACTGGTCGAGGATAGAAAAGCAACATTCACAGATGTTTTCCGGGTCTTTTTTGCTCTCAGCATGGCCGCCATAGGAATCTCTCAATCTGGCTCTTTGGTCCCTGATTCAACTAAAGCAAAAGGTGCTGCTGCTTCCATATTTGCCATTCTTGACCGAAAGTCAGAAATAGACCCAAGCGATGACACTGGAATGACACTGGAAGAATTCAAGGGAGAGATTGAACTTAAGCATGTCAGTTTCAAGTATCCTACCCGACCCGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCATAGTGGCAAGACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATGGAACAGAAATCCAAAGGATGCAAGTTAAATGGCTGAGACAACAGATGGGCCTGGTGAGTCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGCAGACGCAACCGAGGCAGAAATTATAACTGCAGCAGAATTGGCAAATGCTCATACCTTCATTAGTAGTTTGCAGAAGGGTTATGACACGTTAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCACGAGCTATAGTGAAGAGTCCGAAAATATTACTACTAGATGAAGCCACAAGTGCACTGGATGCGGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACCGTGTTATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGCTATCTACTATAAAGGGTGCAGATTTAATTGCAGTAGTTAAAAATGGGGTCATAGCAGAGAAGGGCAAGCATGAAGCATTACTCAACAAGGGAGGTGACTATGCTTCTTTAGTAGCATTGCATACAAGTGCTTCTACATGA 3825 0.3773 MEGDISVNGDPNTYSNSNQDSKKSEAKDEPAKTVPLYRLFSFADPLDHLLMFVGTVGAIGNGISLPLMTLIFGNMINAFGESSNTNEVVDEVSKVSLKFVYLAVGTFFASFLQLTCWMITGDRQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLISTFFGGFVVAFIKGWLLTVVMLACIPLLVMSGAMITVIISRASSEGQAAYSTAASVVEQTIGSIRTVASFTGERLAIAKYNQSLNKAYKTGVQEALASGLGFGLLYFVFICSYGLAVWFGAKMIIEKGYTGGKVLTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLEDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDTESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHLGKIVERGSHVELTKDPDGAYSQLIRLQEIKRLEKNVDVREPESIVHSGRHSSKRSSFLRSISQESLGVGNSGRHSFSASFGVPTSVGFIEPAGEGPQDPPSTAPSPPEVPLYRLAYLNKPEILVLLMGTVSAVITGVILPVFGLLLSKMISIFYEPAHELRKDSKVWAIVFVGLGAVSFLVYPGRFYFFGVAGGKLIQRIRKMCFEKVVHMEVSWFDEAENSSGAIGARLSTDAASVRALVGDALGLLVQNTATAIAGLVIAFESSWQLALIILALVPLLGLNGYLQFKFLKGFSADTKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGKRQGIISGISFGVSFFVLYSVYATSFYAGARLVEDRKATFTDVFRVFFALSMAAIGISQSGSLVPDSTKAKGAAASIFAILDRKSEIDPSDDTGMTLEEFKGEIELKHVSFKYPTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGTEIQRMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKADATEAEIITAAELANAHTFISSLQKGYDTLVGERGVQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGDYASLVALHTSAST 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00988 1274 PANTHER - 16 1271 - -
Gma13g00988 1274 SUPERFAMILY ABC transporter transmembrane region 32 358 IPR036640 GO:0005524|GO:0016021
Gma13g00988 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1268 IPR003439 GO:0005524
Gma13g00988 1274 Gene3D ABC transporter type 1, transmembrane domain 97 1006 IPR036640 GO:0005524|GO:0016021
Gma13g00988 1274 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 16 1271 - -
Gma13g00988 1274 CDD ABC_MTABC3_MDL1_MDL2 374 612 - -
Gma13g00988 1274 CDD ABC_MTABC3_MDL1_MDL2 1032 1266 - -
Gma13g00988 1274 Pfam ABC transporter transmembrane region 710 980 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g00988 1274 Pfam ABC transporter transmembrane region 51 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g00988 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 51 335 - -
Gma13g00988 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1268 IPR027417 -
Gma13g00988 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 52 339 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g00988 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 700 1015 - -
Gma13g00988 1274 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524
Gma13g00988 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 610 IPR003439 GO:0005524
Gma13g00988 1274 Pfam ABC transporter 393 541 IPR003439 GO:0005524
Gma13g00988 1274 Pfam ABC transporter 1051 1199 IPR003439 GO:0005524
Gma13g00988 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 997 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g00988 1274 Gene3D - 1022 1273 IPR027417 -
Gma13g00988 1274 Gene3D - 372 636 IPR027417 -
Gma13g00988 1274 ProSitePatterns ABC transporters family signature. 1171 1185 IPR017871 GO:0005524
Gma13g00988 1274 MobiDBLite consensus disorder prediction 1 29 - -
Gma13g00988 1274 SUPERFAMILY ABC transporter transmembrane region 698 1017 IPR036640 GO:0005524|GO:0016021
Gma13g00988 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 612 IPR027417 -
Gma13g00988 1274 SMART AAA_5 401 589 IPR003593 -
Gma13g00988 1274 SMART AAA_5 1059 1251 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00988 Gma-Chr13 23995695 24001618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00988 25 1269 Calmodulin-binding Proteins AT2G36910 45.780 0.0 1084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00988 K05658 - gmx:100800293 2390.53