Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00984 ATGGCAAGGCAGAAAGATTCCAAGAAGAACAAGGTGAACGACGAAAGCAACAAAACAGTACCCTTTTACAAACTTTTTGCATTTGCAGACTCTTGGGATTATCTACTGATCTTCGTTGGGACAATAAGTGCTGCTGGGAATGGAATAACTAAGGCTTCAACAAATATAATTATGGGAGAAGCAATTGATGCTTTTAGAGGAAATGGTAACACTAAACAAGTAGTTCATGAAGTTTCCAAGGTGTCCCTGAAGTTTGCACTAATAGGTGCAGCTTCCTTTCTGGCCGCATTTCTACAGGTTGCTTGTTGGGTGTCCACCGGGGAGAGACAAGCAGCAAGAATAAGAGGCTTATACCTCAGAGCAATTTTAAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAATACTGGTGAGGTTGTTGGAAGGATGTCAGGTGACACACTTCTTATTCAAGAAGCCCTGGGAGAGAAGGTAGGAAAATTCATACAGTGTGTGGCATGTTTTTTAGGAGGTTTAGTCATAGCATTCATCAAGGGTTGGCTTCTAACCCTTGTCCTTCTATCTTGTATTCCACCTCTTGTCATCTCTGGTTCCATGATGAGCTTTGCTTTTGCAAAGTTGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTGTAGTAGAGCGCACAATTGGTTCAATTCGAACTGTTGCATCATTTACAGGCGAGAATCAAGCTATAGCTCAATACAATCAATCCTTAACCAAAGCTTACAAGACTGCAGTGCAAGATGGAGTGGCTGCTGGTTTAGGCCTGGGGTCAATCCGTTTTTTTATTAATAGCAGTTTTGCATTGGCTGTGTGGTTTGGAGGGAAGATGGTACTAGATAAAGGCTATACACCAGGTCAAGTCATGAGTATATTTCTGGCACTATTTTATGCCTCCATGTCTTTGGGGCAGGTTTCAGCAAATTTAACAGCATTTTCTGCAGGACAAGCTGCTGCTTATAAAATATTTGAAACAATAAATAGGCATCCAGATATTGATGCTTACGACACAGCTGGTCGACAGGAAGATGATATTTCTGGGGATATAGAACTTAAGGAGGTTTTCTTTAGTTATCCTTCAAGACCAGAGGAATTTATATTCAATGGATTTTCTATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGGAGTGGGAAATCAACGGCTATTAGTTTGATCGAGAGATTTTATGATCCACAAGCCGGTGAAGTTCTTATTGATCGTATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAATACTCTTCAGTTGCAGCATCAAAGAAAATATTGCCTATGGTAAGGATGGGGCAACAAATGAAGAAATCAGAGCTGCCACTGAACTTGCTAATGCAGCTAAATTCATTGATAGATTTCCACATGGACTTGACACAATTGTTGGCGAGCATGCTACCCAGCTCTCTGGGGGTCAAAAGCAAAGAATTGCCATAGCAAGGGCAATTTTGAAAGATCCAAGAATTCTACTCCTTGATGAAGCTACAAGTGCCCTTGATGCTGAGTCCGAGAGAGTGGTGCAAGAGACACTAGACAAAATTATGATAAACCGAACAACGGTCATTGTAGCTCACCGCCTAAACACAATAAGGAATGCCGATACCATTGCCGTTATTCATCAAGGAAGAGTAGTAGAAAATGGAAAACATGCTGAGCTCATTAAAGATCCTGATGGAGCTTATAGCCGGCTCATTAAATTGCAAGAAATTAACAGGCAGTCAGATGGTGCAAATGACTCAGACCAGCTAGAAAACTTAGTAGATTCTGAACAACAATCAAGCCAACAGTTTCCTTTCCCTCAATCTTTAAACTTGGGATCATCTGGAAGAGGAATCAGCAGTCATCACTCATTCAGAATATCGAATGCTATGCCTACTACACTTGATCTCTTGAAAACATCAGAAGGAAGGCCTGAAGTTCTTCCTCCAGCAGTATCACATTCAACTCCAGAAGTCTCAATATTCCTTCACCTTGCTTATCTTAACAAGCCTGAAATCCCAATGTTAGTCCTAGGGACTCTTGCAGCCACAGTAACTGGGGCAATACTACCCCTTATGGGGTTTCTTATCTCCAACATGATAAATACTTTCTTTGAGCCTGGGGATGAACTCCGTAAAGACTCAAAGTTTTGGGCTTTAATATTTATTGCCCTTGGAGTGGCTGGCTTCATATTTCAACCATTAAGGTCCTACTTATTTGCTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATTTGTTTTGAGAAAATTATTAACATGGAAGTAGGCTGGTTTGACAAAGCTGAGCATTCAAGTGGAGTACTTGGAGCAAGGCTATCAGTTGATGTGGCTTCTATTCGAACTTTTGTTGGGGATGCACTTGGTTTGATTGTTCAAGATATTGTTACAGTAATTATAGCCTTGGCAATTGCCTTCGAGGCAAACTGGCAGCTTTCTCTCATCATTCTTGTTTTGCTACCTCTATTATTAGTAAATGGACAAGTGCAAATGGGGTCCATGCAAGGATTCGTCACTGATGCAAAGAAACTCTATGAGGAAGCAAGTCAAGTAGCAAATGAGGCGGTAGGTAATATCAGAACAGTAGTCGCTTTCTGTGCAGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTTTAGGACCCATCCAGACAGGTATAAAGCAAGGTTTAGTCAGCGGAACAAGTTTTGGGTTATCACTCTTCTTGGTGTTCTCTGTTAATGCATGCTGTTTTTATGCTGGAGCCCGACTTGTTGAGAATGGCAAAACATCAATCTCAGATGTTTTTCGTGTATTTTGCACTCTCACAATGGCAGCTGTAGCAATGTCACAATCTGGTTTCATGGCCCCAGGTGCGAGCAAAGCAAAAAGTTCTGTTGCTTCTATATTTTCTATTCTTGATCAGAAATCAAATATAGACCCCAGTTATGAGTCCGGAATGACGTTGCAAGAAGTGAAGGGAGAGATTGAGTTCAACCATGTCACTTTCAAGTATCCGACCAGGCCTAATGTAATTGTATTCAGAGATTTTTCCTTGACCGTTCATGCAGGAGAGACGGTTGCTCTAGCAGGCGAAAGTGGAAGTGGAAAGTCAACAGTAATCTCATTGCTGCAAAGATTTTATGAGCCAGATTCAGGTCAGATTACACTGGATGGAACCAAAATCCAAAATCTACAACTTAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAGCCTGTATTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAATGTGGCGATGCAACAGAAGCTGAAATCATAGCTGCAGCAGAACTGGCAAATGCCCACAAATTCATTAGCAGTTTGCAGCAGGGTTATGATGCATTAGTGGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTACTAGATGAAGCCACGAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGATCGAGTGAGGGTGGATAGAACCACAATTGTGGTGGCTCACAGGTTGTCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAAAATGGAGTCATTGCAGAGCACGGAAAGCATGACACTTTGCTTAACAAGGGTGGTATCTATGCTTCATTAGTAGGCTTGCACACAAATCTTGCTTCTTCTTAG 3798 0.4194 MARQKDSKKNKVNDESNKTVPFYKLFAFADSWDYLLIFVGTISAAGNGITKASTNIIMGEAIDAFRGNGNTKQVVHEVSKVSLKFALIGAASFLAAFLQVACWVSTGERQAARIRGLYLRAILRQDISFFDKETNTGEVVGRMSGDTLLIQEALGEKVGKFIQCVACFLGGLVIAFIKGWLLTLVLLSCIPPLVISGSMMSFAFAKLASRGQAAYSEAATVVERTIGSIRTVASFTGENQAIAQYNQSLTKAYKTAVQDGVAAGLGLGSIRFFINSSFALAVWFGGKMVLDKGYTPGQVMSIFLALFYASMSLGQVSANLTAFSAGQAAAYKIFETINRHPDIDAYDTAGRQEDDISGDIELKEVFFSYPSRPEEFIFNGFSISISSGTTAALVGKSGSGKSTAISLIERFYDPQAGEVLIDRINLREFQLKWIRQKIGLVSQEPILFSCSIKENIAYGKDGATNEEIRAATELANAAKFIDRFPHGLDTIVGEHATQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADTIAVIHQGRVVENGKHAELIKDPDGAYSRLIKLQEINRQSDGANDSDQLENLVDSEQQSSQQFPFPQSLNLGSSGRGISSHHSFRISNAMPTTLDLLKTSEGRPEVLPPAVSHSTPEVSIFLHLAYLNKPEIPMLVLGTLAATVTGAILPLMGFLISNMINTFFEPGDELRKDSKFWALIFIALGVAGFIFQPLRSYLFAVAGSKLIKRIRLICFEKIINMEVGWFDKAEHSSGVLGARLSVDVASIRTFVGDALGLIVQDIVTVIIALAIAFEANWQLSLIILVLLPLLLVNGQVQMGSMQGFVTDAKKLYEEASQVANEAVGNIRTVVAFCAEEKVMELYQKKCLGPIQTGIKQGLVSGTSFGLSLFLVFSVNACCFYAGARLVENGKTSISDVFRVFCTLTMAAVAMSQSGFMAPGASKAKSSVASIFSILDQKSNIDPSYESGMTLQEVKGEIEFNHVTFKYPTRPNVIVFRDFSLTVHAGETVALAGESGSGKSTVISLLQRFYEPDSGQITLDGTKIQNLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKCGDATEAEIIAAAELANAHKFISSLQQGYDALVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADSIAVVENGVIAEHGKHDTLLNKGGIYASLVGLHTNLASS 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00984 1265 Gene3D ABC transporter type 1, transmembrane domain 84 995 IPR036640 GO:0005524|GO:0016021
Gma13g00984 1265 Gene3D - 358 611 IPR027417 -
Gma13g00984 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Gma13g00984 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 333 - -
Gma13g00984 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 700 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g00984 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g00984 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1011 1258 IPR027417 -
Gma13g00984 1265 Gene3D - 1011 1263 IPR027417 -
Gma13g00984 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 689 1004 - -
Gma13g00984 1265 SMART AAA_5 1048 1241 IPR003593 -
Gma13g00984 1265 SMART AAA_5 387 573 IPR003593 -
Gma13g00984 1265 Pfam ABC transporter transmembrane region 37 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g00984 1265 Pfam ABC transporter transmembrane region 699 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma13g00984 1265 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524
Gma13g00984 1265 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 13 1262 IPR039421 -
Gma13g00984 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 598 IPR027417 -
Gma13g00984 1265 CDD ABC_MTABC3_MDL1_MDL2 1021 1256 - -
Gma13g00984 1265 MobiDBLite consensus disorder prediction 603 630 - -
Gma13g00984 1265 Pfam ABC transporter 1040 1189 IPR003439 GO:0005524
Gma13g00984 1265 Pfam ABC transporter 379 527 IPR003439 GO:0005524
Gma13g00984 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1021 1258 IPR003439 GO:0005524
Gma13g00984 1265 SUPERFAMILY ABC transporter transmembrane region 24 342 IPR036640 GO:0005524|GO:0016021
Gma13g00984 1265 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 13 1262 - -
Gma13g00984 1265 SUPERFAMILY ABC transporter transmembrane region 690 1001 IPR036640 GO:0005524|GO:0016021
Gma13g00984 1265 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Gma13g00984 1265 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00984 Gma-Chr13 23947214 23952977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00984 7 598 Calmodulin-binding Proteins AT2G36910 36.957 6.01e-108 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00984 K05658 - gmx:100798707 2380.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00385 17 3129832 3137435 Gma13g00984 13 23947214 23952977 GST