Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00981 ATGGAGGTGGAGGATGACTGGGATTTGAGCGCAGAGGACCTCGATTCTCTCGAAAGAGACGCTTTCCAGAAAATTGCTCAACTACGCAACCCTACTCCTCCTCCTTCTTCTCCGCATCAACGCCACCATTCTGCATCTGCAACAACCAACAACCTCCCACCAAAACCCCTTCCCAATTCGCGTTCCCAAACTGTTGATGCGTTCTCTCAAGGAGCAAGAGCATTGCCCACGACATTGAAATCAGGGACAAACAATGACAATCAGGCTAAAGAGCTGCCAAAGTTTTCGGTCAAATTTTTTCTTCATTCCAGTGGAAATGTTGCAGCAAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAGAATCCCTAGATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTCCCACTATCTTCCTTGTCAGAAGCAGAAAAGGTTATTGGAGAAATACCTGGTTATAATGTTCAGGTAGATAACTTAGATCCCTTAGTGCAACGTGCCATTGTTGCAGCGTCTGCAGTTCCAGATCTTCAAGATCGATACCACAAGATCCCTAGTTTTATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCAATTCACTGCCTAAAATTAAATCATTTCCACACGTTATCTGCCATTGCTGTAGCTTCTTGTGTTCAGGACTCGTGGCCTGTTCTCATAATTGCACCATCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTGTCTCAAAATGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCATCTGGATGGACTATTCAACATTATCTCATACGATTTGGTGCCAAAGCTACAGAATATGCTTATGACATGTAACTTTAAGGTTGTGATTGCTGATGAGTCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCACGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAACGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATCAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGGCAAGGACATGAAGCAAATTAATGCTTTATTTCGAGAGTTGGAGATGGTTAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCTCTCAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGGCAGGATGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATCGATTCAATACACGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATACGAATTGATGGAAGTACACCTGCTGCATCCAGGCAACAATTGGTTACTGACTTTCAGGAAAAAGATTCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTTCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCCGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTGAATATATACTACTTGCTAGCAAATGACACGGTTGATGACATCATATGGGACGTAGTGCAAAACAAACTGGAAAATTTGGGGCAGATGTTAGACGGCCATGAGAACGCCTTGGAGGTCTCAGCTAGTCTGCCGGTGAATAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGTGATAACACGGATGGGTTGGAATATGAGCCCAACCCCAAACGTCCCCGAAACTGA 2106 0.4217 MEVEDDWDLSAEDLDSLERDAFQKIAQLRNPTPPPSSPHQRHHSASATTNNLPPKPLPNSRSQTVDAFSQGARALPTTLKSGTNNDNQAKELPKFSVKFFLHSSGNVAAKFQYDQVVIAAFRRIPRSSWNAKERLWIFPLSSLSEAEKVIGEIPGYNVQVDNLDPLVQRAIVAASAVPDLQDRYHKIPSFIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIHCLKLNHFHTLSAIAVASCVQDSWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLSQNGGSNRGGFNIVSSSAKSSIHLDGLFNIISYDLVPKLQNMLMTCNFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGFFGVYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLAGKDMKQINALFRELEMVKAKIKAAKSQEEAESLKFAQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQQLVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFSELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQNKLENLGQMLDGHENALEVSASLPVNSPSKQKTLDQFVRRCDNTDGLEYEPNPKRPRN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00981 701 Gene3D - 167 456 IPR038718 -
Gma13g00981 701 ProSiteProfiles HARP domain profile. 88 165 IPR010003 -
Gma13g00981 701 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 3 685 IPR030101 GO:0006281|GO:0031297|GO:0036310
Gma13g00981 701 CDD SF2_C_SNF 505 629 - -
Gma13g00981 701 SMART ultradead3 191 398 IPR014001 -
Gma13g00981 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 390 IPR014001 -
Gma13g00981 701 MobiDBLite consensus disorder prediction 39 65 - -
Gma13g00981 701 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 685 - -
Gma13g00981 701 MobiDBLite consensus disorder prediction 1 65 - -
Gma13g00981 701 Gene3D - 471 688 IPR027417 -
Gma13g00981 701 Pfam SNF2-related domain 213 487 IPR000330 GO:0005524|GO:0140658
Gma13g00981 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 661 IPR001650 -
Gma13g00981 701 Coils Coil 461 481 - -
Gma13g00981 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 661 IPR027417 -
Gma13g00981 701 Pfam Helicase conserved C-terminal domain 519 618 IPR001650 -
Gma13g00981 701 CDD DEXHc_HARP_SMARCAL1 195 432 - -
Gma13g00981 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 443 IPR027417 -
Gma13g00981 701 SMART helicmild6 535 618 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00981 Gma-Chr13 23921375 23931841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00981 399 645 RAD5 or RAD16-like Gene Family AT1G61140 29.231 3.01e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma13g00981 SNF2_N 2.1e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00981 K14440 - gmx:100797654 1321.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00389 17 3151925 3162557 Gma13g00981 13 23921375 23931841 GST