Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00979 ATGGAGGGCAAAATTGCATTGAAAAAATTGCTGGAAGTTCAGGAAAAGGCATACGTTAATGATACAGATGCAATCAACTGGACTGAGGAACCGTCCATTAAAAATACTCTAGGATCTAGTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCCCAAAATCATGAGCAACAGAACCTGAATCAATTGGGCTTGCTGCAAATTGAGTTAGAGGAGGTGAAGAAGGAGAATCAGAATTTAAGGTCAATGCTAAATGAGATCTCTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTTGGCGATGCAGCAGAAGAAACTATCTTCATCACCTCGAAATAATGAGGACATGCAGAAGGACAGCCAGCAGAATAACATGGAGAAACCAGCGTTACCCTCCTGCAGGCAGTTCTTAAATACTGGTAAAATCAATAACAGGGTAATATTACAAGAAGCAAAAATCGTAGAAGAGCAAGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCCGTAAGAGCGCGATCAGAATCATCTTTGatgggtgatgggtgtcaatggagaaaatatggacaaaagatatcAAAGGGCAATCCTTGTCCTCGGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAGGTTCAAAGGTGTGCTGAAGATGAGAGTGTTGTCATCACAACCTATGAGGGGAATCATAATCATTCACTCCCACCAGCAGCCAGGTCCATGGCGTGCACAACATCAGCAGCACTGAAAATGTTCCTTTCTGGCTCAACCACTAGTTCACATGGAAGCACTTATTCTTATTCAAATTCAGACCTCTTCTCTCCACTATGCACTTCTACCTACTATCCATCTGCAGCACCATCATGTCCAACTATAACTTTGGACTTAACCCAAACCTCTAAGAACAACATGAAATTCCCAAGTGCTATTTCTTCAAACCATTTGCAACCTTTTCCACTTTCATTGCATGGTCAACCTCAACAATCTGAGGGAATATTACCTTCAGAGAAAAACCTTGCCTTGGTGGATGTTGTCAGTGCTGCCATAACCAACGATCCTTCTCTTAAGGCAGCATTAGAAGCAGCTGTTTCCTCAATCATTGGAGACTCTCAGAAATCACTGCCAACTTTGTAG 1152 0.4115 MEGKIALKKLLEVQEKAYVNDTDAINWTEEPSIKNTLGSSLLSLSLNNLEPPQNHEQQNLNQLGLLQIELEEVKKENQNLRSMLNEISEHYAALQNQLLLAMQQKKLSSSPRNNEDMQKDSQQNNMEKPALPSCRQFLNTGKINNRVILQEAKIVEEQAFEASCKKARVSVRARSESSLMGDGCQWRKYGQKISKGNPCPRAYYRCNMGTACPVRKQVQRCAEDESVVITTYEGNHNHSLPPAARSMACTTSAALKMFLSGSTTSSHGSTYSYSNSDLFSPLCTSTYYPSAAPSCPTITLDLTQTSKNNMKFPSAISSNHLQPFPLSLHGQPQQSEGILPSEKNLALVDVVSAAITNDPSLKAALEAAVSSIIGDSQKSLPTL 383
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00979 383 Coils Coil 63 104 - -
Gma13g00979 383 Pfam WRKY DNA -binding domain 182 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma13g00979 383 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 378 IPR044810 GO:0003700
Gma13g00979 383 MobiDBLite consensus disorder prediction 105 129 - -
Gma13g00979 383 ProSiteProfiles WRKY domain profile. 175 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma13g00979 383 SUPERFAMILY WRKY DNA-binding domain 173 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma13g00979 383 Gene3D WRKY domain 164 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma13g00979 383 SMART WRKY_cls 180 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma13g00979 383 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 378 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma13g00979 Gma-Chr13 23895542 23899527 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00979 152 305 WRKY Transcription Factor Family AT4G04450 60.256 8.75e-62 203
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma13g00979 WRKY 1.4e-22 CL0274
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00394 17 3188507 3192874 Gma13g00979 13 23895542 23899527 GST
Gma13g00979 13 23895542 23899527 Gma01g00390 01 4785070 4790972 PCT
Gma15g01753 15 19494775 19500393 Gma13g00979 13 23895542 23899527 PCT