Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00962 ATGGCTGGTGTGAACCCCGAGGCAGGAGGGTGGAAGGCTTATCCTTCTGTTATGGAGACTGCTCTTGATAGTGGTGATGGAAGGAGTCATCATAACATGAGTGATGATGGGTCGGTGATGCATTTCTCTGCTACAAGGTCAGTGGCAGTGCCATCATCTGGACAGAATAAAGTGATTCCTAGTCCAACTCAGTTTAGCATCCTCTATAAGGGGAAAATGTGTATCTATGAAGGAATTCCTGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGTGGGATCCGATTGACTTCATTCATTCCCAAAAGCCCTTCTTCTTCACAGGGAAACTCTACTAATTTGCCTTCACCCCAATCAGTCAAGAGTTCCATTCGCAGGCTGCAAGATGAATTTCCACTGGCTCGAAGGCAATCACTTCAAAGATTTCTTGAGAAGAGAAGAAACAGGTTGGCTAACAAATCCCCCCATGCCTTAACAAAAAATGTGGTTCACAACCCAGACAAGGGCTTTTCTCCTGACGACACGCCAGATTTTGGTTTGTTGAACTTGAACTTTCAGAGGAGGGATTTCAGCCCCGTGGTGCTGCCTCTTTAA 624 0.4535 MAGVNPEAGGWKAYPSVMETALDSGDGRSHHNMSDDGSVMHFSATRSVAVPSSGQNKVIPSPTQFSILYKGKMCIYEGIPAEKVREIMLIASVSAKSAEMKSGIRLTSFIPKSPSSSQGNSTNLPSPQSVKSSIRRLQDEFPLARRQSLQRFLEKRRNRLANKSPHALTKNVVHNPDKGFSPDDTPDFGLLNLNFQRRDFSPVVLPL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00962 207 ProSiteProfiles Tify domain profile. 58 93 IPR010399 -
Gma13g00962 207 PANTHER DIVERGENT CCT MOTIF PROTEIN 1 183 - -
Gma13g00962 207 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 183 IPR040390 -
Gma13g00962 207 MobiDBLite consensus disorder prediction 109 132 - -
Gma13g00962 207 Pfam Jas motif 142 165 IPR018467 -
Gma13g00962 207 MobiDBLite consensus disorder prediction 160 180 - -
Gma13g00962 207 SMART tify_2 58 93 IPR010399 -
Gma13g00962 207 Pfam tify domain 60 92 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00962 Gma-Chr13 23779824 23782534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00962 62 166 Tify Gene Family AT5G20900 38.596 2.44e-17 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma13g00962 tify 9.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00962 K13464 - gmx:100306282 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00407 17 3295447 3298000 Gma13g00962 13 23779824 23782534 GST
Gma13g00962 13 23779824 23782534 Gma15g01733 15 18876082 18879962 PCT
Gma13g00962 13 23779824 23782534 Gma09g00721 09 8693489 8697636 PCT
Gma15g01733 15 18876082 18879962 Gma13g00962 13 23779824 23782534 PCT
Gma09g00721 09 8693489 8697636 Gma13g00962 13 23779824 23782534 PCT