Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00960 ATGGGATTCTACGCTGAAGACACTCTCTCAGGCTTGACAATAGGCCAGGCCATATACGAGGTAGCTCTGATGATTGCGGTTCTGAGATGGGTCTTGTGCTTGATCTTCAGAGTGATGAACGACAGAAGAAGAACAGAATCCGATGAGACCCCAGCCGCAGAAGCATGTTGTCAGAAGGAGTACAACAACACTCTTGTGCTGACGACGTTCGGAGAGATTAAGGAGAGGCTGCCGCAGACGGAGGAGACATGTGCGGTGTGCCTGAGCCAGCTGAGCGTGGAGGACGAGGTTAGGGAGCTGATGAACTGCTACCACGTGTTCCACAGAGAGTGCATAGAGAGATGGTTGGAGCACGAGCATGAGAATCACATCCCCACGTGTCCTCTCTGCAGGGCTCCTTTGCTGAGTTCTTGCTGCCACCACAGCTCCACCACTTGTGTCCCTCCTCCTCAGCCTAGTTGGGCTGTGGAGAGACTTCTATATCTCTTTGGGGATGATCTCTTGCCTTGTTAG 513 0.5283 MGFYAEDTLSGLTIGQAIYEVALMIAVLRWVLCLIFRVMNDRRRTESDETPAAEACCQKEYNNTLVLTTFGEIKERLPQTEETCAVCLSQLSVEDEVRELMNCYHVFHRECIERWLEHEHENHIPTCPLCRAPLLSSCCHHSSTTCVPPPQPSWAVERLLYLFGDDLLPC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00960 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
Gma13g00960 170 SMART ring_2 84 130 IPR001841 -
Gma13g00960 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 169 - -
Gma13g00960 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 169 - -
Gma13g00960 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 135 IPR013083 -
Gma13g00960 170 Pfam Ring finger domain 83 131 IPR001841 -
Gma13g00960 170 SUPERFAMILY RING/U-box 77 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00960 Gma-Chr13 23766034 23766983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00960 1 169 C3H Transcription Factor Family AT3G43430 45.714 1.30e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00960 K16281 - gmx:111138523 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00960 13 23766034 23766983 Gma13g00960 13 23766034 23766983 ECH
Gma17g00409 17 3308789 3309537 Gma13g00960 13 23766034 23766983 GST