Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00955 ATGGCTATTCCTTCACTAGTAAACCAGCCTCTAGCATTCAGCTTCTCCTTCCTCCTCTTTCTTGCTCTCTGCACCCCATTGGCTGCTAACAACACCGATTTCGGAGGTTCAGCCTGCCTCAAGGTTTCCCCCACCCACTTCGCCGGCTCAGTCACCGAAGTCATAACTGCTATACGACAAGTCGCTTCCATCCTCTCACGCTTCAGCCCTCCCTTCGCCAACTTCCGCCTCGCCACCGCCCTCGCCGACTGCCTTGACTTGCTCGACCTCTCCTCCGACGTCCTCTCCTGGGCCCTCTCCGCCTCTCAGAACCCCAAAGGGAAGCATAACAGTACGGGGAATCTGAGTTCGGATTTGAGGACATGGCTAAGTGCGGCGCTTGCGCATCCAGAGACGTGCATGGAGGGATTGGAAGGGACAAATAGCATTGTGAAGGGTTTGGTCTCAGCCGGAATCGGCCAAGTGGTGTCGCTGGTGGAGCAGCTTCTTGCGCAGGTGGTGCCCGTACAGGATCAATTTGACGACGCCAGCAGCAAGGGGCAATTTCCTTTGTGGGTTAAGCCCAAGGAAAAGAAGCTGCTGCAATCAATTGGAATGACAGCTGCTGATGTTACTGTAGCGTTAGATGGGAGTGGGAACTATGCTAAGATCATGGACGCGGTGCTTGCGGCACCGGATTACAGCATGAAGCGTTTTGTGATTTTGGTAAAGAAGGGTGTTTATGTTGAGAACGTGGAGATCAAGAGGAAGAAGTGGAATATTATGATGGTTGGAGAGGGGATGGATTCCACCATTATCTCCGGTAACCGGAGTGTCGTCGACGGTTGGACCACATTCCGGTCAGCTACATTCGCTGTGAGTGGCAGAGGATTCATAGCAAGAGACATATCCTTTCAGAACACCGCAGGGCCCGAGAAGCACCAAGCAGTGGCACTAAGATCAGACACTGACCTCTCAGTGTTCTTCCGATGTGGGATTTTCGGTTACCAAGACAGTCTCTACACCCACACAATGCGCCAATTCTTCAGAGAATGCACAATCACTGGAACGGTTGATTACATCTTTGGTGACGCCACTGCAGTGTTCCAAAACTGCTTCCTACGGGTCAAGAAAGGGTTGCCAAACCAAAAGAACACAATCACAGCACACGGTAGAAAAGACCCAAATGAACCAACCGGTTTCTCGTTCCAATTCTGCAACATAACCGCAGATTCTGACCTTGTACCTTGGGTTAGCAGCACTCAAAGTTACCTGGGGAGACCCTGGAAGAGTTACTCACGAACAGTTTTCATGCAATCGTACATGAGTGAGGTGATAAGGGGAGAAGGGTGGTTGGAGTGGAATGGGAACTTTGCATTGGAGACATTGTACTATGGTGAGTACATGAACACCGGGGCAGGTGCTGGACTTGCTAACCGTGTCAAGTGGCCAGGGTACCATCCATTCAATGATTCCAACCAGGCTAGTAACTTCACAGTGGCTCAGTTTATTGAGGGGAATCTATGGTTGCCTTCAACTGGAGTAACGTACACTGCGGGACTCATACTTTAG 1551 0.5106 MAIPSLVNQPLAFSFSFLLFLALCTPLAANNTDFGGSACLKVSPTHFAGSVTEVITAIRQVASILSRFSPPFANFRLATALADCLDLLDLSSDVLSWALSASQNPKGKHNSTGNLSSDLRTWLSAALAHPETCMEGLEGTNSIVKGLVSAGIGQVVSLVEQLLAQVVPVQDQFDDASSKGQFPLWVKPKEKKLLQSIGMTAADVTVALDGSGNYAKIMDAVLAAPDYSMKRFVILVKKGVYVENVEIKRKKWNIMMVGEGMDSTIISGNRSVVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDTDLSVFFRCGIFGYQDSLYTHTMRQFFRECTITGTVDYIFGDATAVFQNCFLRVKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNITADSDLVPWVSSTQSYLGRPWKSYSRTVFMQSYMSEVIRGEGWLEWNGNFALETLYYGEYMNTGAGAGLANRVKWPGYHPFNDSNQASNFTVAQFIEGNLWLPSTGVTYTAGLIL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00955 516 Pfam Pectinesterase 203 500 IPR000070 GO:0030599|GO:0042545
Gma13g00955 516 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Gma13g00955 516 SMART PMEI_2 30 165 IPR006501 GO:0004857
Gma13g00955 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 160 IPR035513 -
Gma13g00955 516 CDD PMEI-like_4 15 170 - -
Gma13g00955 516 PANTHER PECTINESTERASE 179 514 - -
Gma13g00955 516 PANTHER PECTINESTERASE 43 173 - -
Gma13g00955 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 43 173 - -
Gma13g00955 516 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 179 514 - -
Gma13g00955 516 SUPERFAMILY Pectin lyase-like 199 513 IPR011050 -
Gma13g00955 516 Pfam Plant invertase/pectin methylesterase inhibitor 71 149 IPR006501 GO:0004857
Gma13g00955 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 167 IPR035513 -
Gma13g00955 516 Gene3D - 198 514 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00955 Gma-Chr13 23703865 23708206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00955 15 515 Carbohydrate Esterase AT3G43270 61.479 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00955 K01051 - gmx:100812756 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00415 17 3369014 3372685 Gma13g00955 13 23703865 23708206 GST
Gma13g00955 13 23703865 23708206 Gma15g01726 15 18691243 18693960 PCT
Gma13g00955 13 23703865 23708206 Gma09g00713 09 8502201 8504886 PCT
Gma15g01726 15 18691243 18693960 Gma13g00955 13 23703865 23708206 PCT
Gma09g00713 09 8502201 8504886 Gma13g00955 13 23703865 23708206 PCT