Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00954 ATGGCTATTCCATCTCCTAAAATTTTCCTCCTCTTAACATTCTTCTTCTCACATTCTATAGCTGTGAAGTCCTCCAATGTTTCCACAACCCCAACATTGCATGCAACCTTCCCATTTCCTGAAGTTAGCAGCTTCAATTCATCTAAGCTTTCAATCTCAATAAACATAAATCCAAACATCATCAACACCCTTCTTCAGTCCCTCCAAGCAGCAATATCTGAAGCCACAAAACTATCTGATCTATTAAACAACGCTGGACATAACATCATAGAGAACAAAATAGGAGCAGTCCAAGACTGTAGAGAACTTCAACAATCCACCTTAGCTTCCTTAAAAAGATCACTATCAGGAATCCGTTCCCAAGACTCCAGAAAACTAGTTGATGCAAGAACCTACCTCAGTGCAGCACTCACCAACAAGGACACGTGTCTAGAGAGCTTAGATTCTGCTTCTGGTACCCTTAAGCCAGTTCTAGTGAATTCTGTGATCAACTCTTACAAAGATGTCAGTGACTCTCTCTCAATGCTCCCCAAGCCTGAGAGGAAGGCTTCCAAAGGACACAAGAACCGGCGTTTGTTGTGGTTGTCAACGAAAAATCGCCGTCTCTTGCAAAGCAATGATGGAGGAGAGCTTGTTGTGGCTGCAGATGGAACTGGGAACTTTAGCACCATCACTGAGGCTATCAACTTTGCTCCGAATAACAGTGTTGGTAGGACAGTAATCTATGTCAAAGAAGGGACGTACGAGGAAAATGTTGAAATCCCAAGCTATAAGACCAATATTGTTCTGCTTGGCGATGGAAAGGATGTCACATTTATTACTGGCAACAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTCTCTGGTGAGGGCTTTCTGGCACGTGATATAGCTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTGGCCTTGAGAGTGAATGCAGACTTCACTGCTTTCTACAGGTGTGCTATGTATGGTTACCAAGACACTCTCTATGTCCACTCCTTTAGACAATTCTATAGGGAGTGTGAAATTTTTGGAACCATAGATTACATATTTGGGAATGCAGCAGTGGTTTTACAAGCATCCAACATTATCACAAGGATGCCAATGCTTGGTCAATTCACTGTCATCACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATTTCAATCCAAAACTGTTCAATTCTAGCCACCACAGATTTGTACTCCAATTCTGGTAGTGTCAAGAGCTACCTTGGAAGGCCATGGAGGGTCTATTCTCGTACTGTTTTCCTTGAGTCCTACATTGATCAATTTATTGACCCAATGGGGTGGAAAGAGTGGTCTGGTGATCAAGGCTTGGACACTTTGTATTACGGAGAGTATGCTAATTATGGGCCTGGTTCAGGGACTGATAACCGAGTCAATTGGGCTGGGTTCCATGTAATGGATTATGACAGTGCCTACAACTTCACAGTTTCGGAGTTTATTATTGGTGATGCTTGGCTTGGGTCTACTTCATTCCCTTATGATGATGGGATTTAA 1563 0.4344 MAIPSPKIFLLLTFFFSHSIAVKSSNVSTTPTLHATFPFPEVSSFNSSKLSISININPNIINTLLQSLQAAISEATKLSDLLNNAGHNIIENKIGAVQDCRELQQSTLASLKRSLSGIRSQDSRKLVDARTYLSAALTNKDTCLESLDSASGTLKPVLVNSVINSYKDVSDSLSMLPKPERKASKGHKNRRLLWLSTKNRRLLQSNDGGELVVAADGTGNFSTITEAINFAPNNSVGRTVIYVKEGTYEENVEIPSYKTNIVLLGDGKDVTFITGNRSVIDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECEIFGTIDYIFGNAAVVLQASNIITRMPMLGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSNSGSVKSYLGRPWRVYSRTVFLESYIDQFIDPMGWKEWSGDQGLDTLYYGEYANYGPGSGTDNRVNWAGFHVMDYDSAYNFTVSEFIIGDAWLGSTSFPYDDGI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00954 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 176 IPR035513 -
Gma13g00954 520 PANTHER PECTINESTERASE 7 519 - -
Gma13g00954 520 Pfam Pectinesterase 211 506 IPR000070 GO:0030599|GO:0042545
Gma13g00954 520 PANTHER PECTINESTERASE 7 519 - -
Gma13g00954 520 CDD PMEI-like_3 64 175 - -
Gma13g00954 520 Pfam Plant invertase/pectin methylesterase inhibitor 66 164 IPR006501 GO:0004857
Gma13g00954 520 SMART PMEI_2 17 175 IPR006501 GO:0004857
Gma13g00954 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 178 IPR035513 -
Gma13g00954 520 SUPERFAMILY Pectin lyase-like 210 517 IPR011050 -
Gma13g00954 520 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Gma13g00954 520 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 176 IPR006501 GO:0004857
Gma13g00954 520 Gene3D - 208 520 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00954 Gma-Chr13 23698824 23701451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00954 14 520 Carbohydrate Esterase AT2G26440 64.394 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00954 - K01051 gmx:102666380 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00954 13 23698824 23701451 Gma13g00954 13 23698824 23701451 ECH
Gma17g00416 17 3375412 3377808 Gma13g00954 13 23698824 23701451 GST