Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00953 ATGGTGGCGCATTCAGAGAAGATGGTGAAATTGGTGTGCAGCTCCACGGACTACAAGGAAAAATGTGAAGGCCCTCTTAACAAGGCCATGGAGGATGACCCCAAACTCACGCAGCCAAAAGACCTTCTCAAGGCATATGTCAAATTTGCTGAGGATGAGGTTAGCAAGGCCTTCAACAAAACCATCTCCATGAAGTTTGAAACTGAACAAGAGAAAGGTGCCTTTGAAGATTGCAAGAAGCTCTTTGAGGATGCCAAGGACGACATAGAATCCTCCATCTCCGAACTTGGAAAAGTTGAGATGAAGAATCTTTCTCAAAGGACTCCTGATTTCAACAGCTGGCTCAGTGCTGTCATCTCCTTCCAACAGAACTGTGTTGATGGCTTTCCTGAGGGAAACACAAGGACCGAGCTTCAGAATCTCTTCAACCATTCCAAGGATTTCGTTAGCAACTCCCTTGCCATTCTGTCTCAGGCTATGGATAACAAACCTACACCTAATGTCACTGTGGCTAAAGATGGCAGCGGAGATTTCAAAACCATCTCTGAATGTTTAAATGCCGTCCCGCAAAAATATGAAGGACGGTATGTGATTTTTGTTAAAGAAGGAGTATACGATGAGACAGTGACAGTAACAAAGAAAATGCAAAATATAACCATGTATGGTGATGGATCCCAAAAGAGCATCATCACTGGCAGCAAAAACTACAGGGACGGTGTTAGGGCATTCCTAACTGCAAGTTTTGTGGTAGAGGGAGATGGATTCATAAGCCTAGCAATGGGATTCAGAAACACCGCAGGCCCTGATGGGCACCAAGCAGTGGCTGCAAGAGTGCAGGCAGATCGTGCGGTGTTTGCTAACTGTCGGTTTGAGGGATACCAAGACACTCTATACACCCAAGCCCACAGACAATTCTACAGGAGCTGCATCATTGCAGGCACGATTGACTTCATATTTGGCGCAGCTGTGGTGTTCCAGAACTGGATGTTCCAGAACTGCATCATGGTAGTTAGGAAGCCACTGGACAACCAGCAGAACATGGTGACTACTCAAGGGAGGGTGGACAAGCAACAAGCCACAGGAATTGTGCTGCAGAAGTGCACAATCAAATCTGATGACTCACTGGTTCCAGTGAAGGACACGATCAGGAGCTACCTTGGGAGGCCATGGAAGGAGTTCTCGAGAACCGTTGTTATGGAATCGGAAATAGGCGACTTCATTCACCCAGATGGCTGGACGGCTTGGGCGGGAAACTTTGCTCTCAAGACATTGTACTATGCTGAGTATGCCAACACAGGACCTGGTGCCAGCACCAATGCTAGGATCAAGTGGCCTGGTTACCGAGTCATTAACAAGGATGAGGCTACCCAGTTCACTGTGGGCTCTTTCATGAAAGGCACATGGATCCAGAACACAGGCGTGCCCTCTACACAAGGCTTGTACAATTAA 1449 0.4727 MVAHSEKMVKLVCSSTDYKEKCEGPLNKAMEDDPKLTQPKDLLKAYVKFAEDEVSKAFNKTISMKFETEQEKGAFEDCKKLFEDAKDDIESSISELGKVEMKNLSQRTPDFNSWLSAVISFQQNCVDGFPEGNTRTELQNLFNHSKDFVSNSLAILSQAMDNKPTPNVTVAKDGSGDFKTISECLNAVPQKYEGRYVIFVKEGVYDETVTVTKKMQNITMYGDGSQKSIITGSKNYRDGVRAFLTASFVVEGDGFISLAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQAHRQFYRSCIIAGTIDFIFGAAVVFQNWMFQNCIMVVRKPLDNQQNMVTTQGRVDKQQATGIVLQKCTIKSDDSLVPVKDTIRSYLGRPWKEFSRTVVMESEIGDFIHPDGWTAWAGNFALKTLYYAEYANTGPGASTNARIKWPGYRVINKDEATQFTVGSFMKGTWIQNTGVPSTQGLYN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00953 482 PANTHER PECTINESTERASE 4 159 - -
Gma13g00953 482 Gene3D - 161 480 IPR012334 -
Gma13g00953 482 Pfam Pectinesterase 167 466 IPR000070 GO:0030599|GO:0042545
Gma13g00953 482 ProSitePatterns Pectinesterase signature 2. 311 320 IPR033131 -
Gma13g00953 482 Gene3D Invertase/pectin methylesterase inhibitor family protein 5 159 IPR035513 -
Gma13g00953 482 Pfam Plant invertase/pectin methylesterase inhibitor 8 155 IPR006501 GO:0004857
Gma13g00953 482 SUPERFAMILY Pectin lyase-like 165 479 IPR011050 -
Gma13g00953 482 SMART PMEI_2 4 155 IPR006501 GO:0004857
Gma13g00953 482 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 158 IPR006501 GO:0004857
Gma13g00953 482 CDD PMEI-like_3 11 157 - -
Gma13g00953 482 PANTHER PECTINESTERASE 159 480 - -
Gma13g00953 482 PANTHER PECTINESTERASE 159 480 - -
Gma13g00953 482 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 7 158 IPR035513 -
Gma13g00953 482 PANTHER PECTINESTERASE 4 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00953 Gma-Chr13 23695748 23698079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00953 6 482 Carbohydrate Esterase AT4G33230 47.985 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00953 - - gmx:100784679 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00953 13 23695748 23698079 Gma13g00953 13 23695748 23698079 ECH
Gma17g00417 17 3379147 3381504 Gma13g00953 13 23695748 23698079 GST
Gma13g00953 13 23695748 23698079 Gma15g01718 15 18613622 18615977 PCT
Gma13g00953 13 23695748 23698079 Gma09g00707 09 8434767 8437721 PCT
Gma15g01718 15 18613622 18615977 Gma13g00953 13 23695748 23698079 PCT
Gma09g00707 09 8434767 8437721 Gma13g00953 13 23695748 23698079 PCT